On an optimal setting of constant delays for the D-QSSA model reduction method applied to a class of chemical reaction networks

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作者
Ctirad Matonoha
Štěpán Papáček
Volodymyr Lynnyk
机构
[1] Institute of Computer Science,Czech Academy of Sciences
[2] Institute of Information Theory and Automation,Czech Academy of Sciences
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关键词
reaction network; model reduction; singular perturbation; quasi-steady-state approximation; D-QSSA method; optimization; 92C45; 34A34; 65K10;
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摘要
We develop and test a relatively simple enhancement of the classical model reduction method applied to a class of chemical networks with mass conservation properties. Both the methods, being (i) the standard quasi-steady-state approximation method, and (ii) the novel so-called delayed quasi-steady-state approximation method, firstly proposed by Vejchodský (2014), are extensively presented. Both theoretical and numerical issues related to the setting of delays are discussed. Namely, for one slightly modified variant of an enzyme-substrate reaction network (Michaelis-Menten kinetics), the comparison of the full non-reduced system behavior with respective variants of reduced model is presented and the results discussed. Finally, some future prospects related to further applications of the delayed quasi-steady-state approximation method are proposed.
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页码:831 / 857
页数:26
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