gcaPDA: a haplotype-resolved diploid assembler

被引:0
|
作者
Min Xie
Linfeng Yang
Chenglin Jiang
Shenshen Wu
Cheng Luo
Xin Yang
Lijuan He
Shixuan Chen
Tianquan Deng
Mingzhi Ye
Jianbing Yan
Ning Yang
机构
[1] Huazhong Agricultural University,National Key Laboratory of Crop Genetic Improvement
[2] BGI Genomics,Guangdong Engineering Research Center of Plant and Animal Genomics
[3] BGI-Shenzhen,undefined
[4] Hubei Hongshan Laboratory,undefined
来源
关键词
Haplotype-resolved ; assembler; Diploid; Highly heterozygous genomes; Gamete cells;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] gcaPDA: a haplotype-resolved diploid assembler
    Xie, Min
    Yang, Linfeng
    Jiang, Chenglin
    Wu, Shenshen
    Luo, Cheng
    Yang, Xin
    He, Lijuan
    Chen, Shixuan
    Deng, Tianquan
    Ye, Mingzhi
    Yan, Jianbing
    Yang, Ning
    BMC BIOINFORMATICS, 2022, 23 (01)
  • [2] Haplotype-resolved genome analyses of a heterozygous diploid potato
    Zhou, Qian
    Tang, Die
    Huang, Wu
    Yang, Zhongmin
    Zhang, Yu
    Hamilton, John P.
    Visser, Richard G. F.
    Bachem, Christian W. B.
    Robin Buell, C.
    Zhang, Zhonghua
    Zhang, Chunzhi
    Huang, Sanwen
    NATURE GENETICS, 2020, 52 (10) : 1018 - +
  • [3] Haplotype-resolved genome analyses of a heterozygous diploid potato
    Qian Zhou
    Dié Tang
    Wu Huang
    Zhongmin Yang
    Yu Zhang
    John P. Hamilton
    Richard G. F. Visser
    Christian W. B. Bachem
    C. Robin Buell
    Zhonghua Zhang
    Chunzhi Zhang
    Sanwen Huang
    Nature Genetics, 2020, 52 : 1018 - 1023
  • [4] Haplotype-resolved assembly of diploid genomes without parental data
    Cheng, Haoyu
    Jarvis, Erich D.
    Fedrigo, Olivier
    Koepfli, Klaus-Peter
    Urban, Lara
    Gemmell, Neil J.
    Li, Heng
    NATURE BIOTECHNOLOGY, 2022, 40 (09) : 1332 - +
  • [5] Haplotype-resolved assembly of diploid genomes without parental data
    Haoyu Cheng
    Erich D. Jarvis
    Olivier Fedrigo
    Klaus-Peter Koepfli
    Lara Urban
    Neil J. Gemmell
    Heng Li
    Nature Biotechnology, 2022, 40 (9) : 1332 - 1335
  • [6] Report Haplotype-resolved assembly of diploid and polyploid genomes using quantum computing
    Chen, Yibo
    Huang, Jun-Han
    Sun, Yuhui
    Zhang, Yong
    Li, Yuxiang
    Xu, Xun
    CELL REPORTS METHODS, 2024, 4 (05):
  • [7] An annotated haplotype-resolved genome sequence assembly of diploid German chamomile, Matricaria chamomilla
    Woohyeon Cho
    Jiawu Feng
    Manuela Knauft
    Sebastian Albrecht
    Axel Himmelbach
    Lars-Gernot Otto
    Martin Mascher
    Scientific Data, 12 (1)
  • [8] The haplotype-resolved genome of diploid Chrysanthemum indicum unveils new acacetin synthases genes and their evolutionary history
    Hou, Zhuangwei
    Yang, Song
    He, Weijun
    Lu, Tingting
    Feng, Xunmeng
    Zang, Lanlan
    Bai, Wenhui
    Chen, Xueqing
    Nie, Bao
    Li, Cheng
    Wei, Min
    Ma, Liangju
    Han, Zhengzhou
    Zou, Qingjun
    Li, Wei
    Wang, Li
    PLANT JOURNAL, 2024, 119 (03): : 1336 - 1352
  • [9] Haplotype-resolved Assembly of a Tetraploid Blackberry Genome
    Paudel, Dev
    Parajuli, Saroj
    Peng, Ze
    Parrish, S. Brooks
    Deng, Zhanao
    HORTSCIENCE, 2022, 57 (09) : S148 - S148
  • [10] Chromosome-scale haplotype-resolved pangenomics
    Garg, Shilpa
    Balboa, Renzo
    Kuja, Josiah
    TRENDS IN GENETICS, 2022, 38 (11) : 1103 - 1107