LA-iMageS: a software for elemental distribution bioimaging using LA–ICP–MS data

被引:0
|
作者
Hugo López-Fernández
Gustavo de S. Pessôa
Marco A. Z. Arruda
José L. Capelo-Martínez
Florentino Fdez-Riverola
Daniel Glez-Peña
Miguel Reboiro-Jato
机构
[1] University of Vigo,ESEI: Escuela Superior de Ingeniería Informática
[2] University of Campinas,Group of Spectrometry, Sample Preparation and Mechanization (GEPAM), Institute of Chemistry
[3] UNICAMP,National Institute of Science and Technology for Bioanalytics, Institute of Chemistry
[4] University of Campinas,UCIBIO
[5] UNICAMP,REQUIMTE, Chemistry Department, Faculty of Science and Technology
[6] University NOVA of Lisbon,ProteoMass Scientific Society
[7] Madan Parque,undefined
关键词
Elemental distribution; Laser ablation; LA–ICP–MS imaging; Software;
D O I
暂无
中图分类号
学科分类号
摘要
The spatial distribution of chemical elements in different types of samples is an important field in several research areas such as biology, paleontology or biomedicine, among others. Elemental distribution imaging by laser ablation inductively coupled plasma mass spectrometry (LA–ICP–MS) is an effective technique for qualitative and quantitative imaging due to its high spatial resolution and sensitivity. By applying this technique, vast amounts of raw data are generated to obtain high-quality images, essentially making the use of specific LA–ICP–MS imaging software that can process such data absolutely mandatory. Since existing solutions are usually commercial or hard-to-use for average users, this work introduces LA-iMageS, an open-source, free-to-use multiplatform application for fast and automatic generation of high-quality elemental distribution bioimages from LA–ICP–MS data in the PerkinElmer Elan XL format, whose results can be directly exported to external applications for further analysis. A key strength of LA-iMageS is its substantial added value for users, with particular regard to the customization of the elemental distribution bioimages, which allows, among other features, the ability to change color maps, increase image resolution or toggle between 2D and 3D visualizations.
引用
收藏
相关论文
共 50 条
  • [1] LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data
    Lopez-Fernandez, Hugo
    Pessoa, Gustavo de S.
    Arruda, Marco A. Z.
    Capelo-Martinez, Jose L.
    Fdez-Riverola, Florentino
    Glez-Pena, Daniel
    Reboiro-Jato, Miguel
    JOURNAL OF CHEMINFORMATICS, 2016, 8 : 1 - 10
  • [2] Elemental bioimaging of Cisplatin in Caenorhabditis elegans by LA-ICP-MS
    Crone, Barbara
    Aschner, Michael
    Schwerdtle, Tanja
    Karst, Uwe
    Bornhorst, Julia
    METALLOMICS, 2015, 7 (07) : 1189 - 1195
  • [3] Bioimaging of the elemental distribution in cocoa beans by means of LA-ICP-TQMS
    Thyssen, Georgina M.
    Keil, Claudia
    Wolff, Melanie
    Sperling, Michael
    Kadow, Daniel
    Haase, Hajo
    Karst, Uwe
    JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY, 2018, 33 (02) : 187 - 194
  • [4] MapIT!: a simple and user-friendly MATLAB script to elaborate elemental distribution images from LA-ICP-MS data
    Sforna, M. C.
    Lugli, F.
    JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY, 2017, 32 (05) : 1035 - 1043
  • [5] Weighted Linear Regression Improves Accuracy of Quantitative Elemental Bioimaging by Means of LA-ICP-MS
    Funke, Sabrina K., I
    Sperling, Michael
    Karst, Uwe
    ANALYTICAL CHEMISTRY, 2021, 93 (47) : 15720 - 15727
  • [6] LA-ICP-MS AS A TOOL FOR ELEMENTAL MAPPING
    Warchilova, Tereza
    Vaculovic, Tomas
    Cadkova, Zuzana
    Otruba, Vitezslav
    Szakova, Jirina
    Kanicky, Viktor
    CECE 2014: 11TH INTERNATIONAL INTERDISCIPLINARY MEETING ON BIOANALYSIS, 2014, : 50 - 52
  • [7] Elemental and molecular imaging by LA-ICP-MS
    Fernandez, Beatriz
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2019, 411 (03) : 547 - 548
  • [8] Elemental and molecular imaging by LA-ICP-MS
    Beatriz Fernández
    Analytical and Bioanalytical Chemistry, 2019, 411 : 547 - 548
  • [9] Elemental analysis of atherosclerotic plaque by ICP-MS and LA-ICP-MS
    Jagielska, Agata
    Wagner, Barbara
    Ruszczynska, Anna
    Gawor, Andrzej
    Bulska, Ewa
    Zieminska, Elzbieta
    Toczylowska, Beata
    Jakuczun, Wawrzyniec
    Szostek, Malgorzata
    PROCEEDINGS OF THE 14TH INTERNATIONAL STUDENTS CONFERENCE MODERN ANALYTICAL CHEMISTRY, 2018, : 44 - 50
  • [10] Elemental Bioimaging in Kidney by LA-ICP-MS As a Tool to Study Nephrotoxicity and Renal Protective Strategies in Cisplatin Therapies
    Moreno-Gordaliza, Estefania
    Giesen, Charlotte
    Lazaro, Alberto
    Esteban-Fernandez, Diego
    Humanes, Blanca
    Canas, Benito
    Panne, Ulrich
    Tejedor, Alberto
    Jakubowski, Norbert
    Milagros Gomez-Gomez, M.
    ANALYTICAL CHEMISTRY, 2011, 83 (20) : 7933 - 7940