The stoichiometry of amino acid transport with co- or counter-substrates of a given system has been found to vary with the amino acid species. This phenomenon has been studied directly in only a few cases, however, by measuring the fluxes of the substrates simultaneously. More frequently, the apparent transport stoichiometries of single amino acid species with co- or counter-substrates are estimated indirectly by thermodynamic criteria or cooperative kinetic effects. Unfortunately the latter indirect mea-sures of apparent stoichiometry often yield different results than direct measurement of simultaneous fluxes. These differences often cannot be explained by uncoupled transport of one of the co- or counter-substrates or by other characteristics of the transport process that would make the direct measurement of stoichiometry inaccurate. For these reasons, investigators are encouraged to measure the stoichiometry of transport directly by measuring simultaneous fluxes of co- and counter-substrates. Indirect measures of apparent stoichiometry may, however, reflect important details of a transport mechanism even if they are inconsistent with the actual stoichiometry of transport.