The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features

被引:0
|
作者
Muktak Aklujkar
Shelley A Haveman
Raymond DiDonato
Olga Chertkov
Cliff S Han
Miriam L Land
Peter Brown
Derek R Lovley
机构
[1] University of Massachusetts Amherst,Department of Energy
[2] Joint Genome Institute,undefined
[3] Oak Ridge National Laboratory,undefined
来源
BMC Genomics | / 13卷
关键词
Genome; Metabolism; Physiology; 2,3-butanediol;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features
    Aklujkar, Muktak
    Haveman, Shelley A.
    DiDonato, Raymond, Jr.
    Chertkov, Olga
    Han, Cliff S.
    Land, Miriam L.
    Brown, Peter
    Lovley, Derek R.
    BMC GENOMICS, 2012, 13
  • [2] The genome of M-acetivorans reveals extensive metabolic and physiological diversity
    Galagan, JE
    Nusbaum, C
    Roy, A
    Endrizzi, MG
    Macdonald, P
    FitzHugh, W
    Calvo, S
    Engels, R
    Smirnov, S
    Atnoor, D
    Brown, A
    Allen, N
    Naylor, J
    Stange-Thomann, N
    DeArellano, K
    Johnson, R
    Linton, L
    McEwan, P
    McKernan, K
    Talamas, J
    Tirrell, A
    Ye, WJ
    Zimmer, A
    Barber, RD
    Cann, I
    Graham, DE
    Grahame, DA
    Guss, AM
    Hedderich, R
    Ingram-Smith, C
    Kuettner, HC
    Krzycki, JA
    Leigh, JA
    Li, WX
    Liu, JF
    Mukhopadhyay, B
    Reeve, JN
    Smith, K
    Springer, TA
    Umayam, LA
    White, O
    White, RH
    de Macario, EC
    Ferry, JG
    Jarrell, KF
    Jing, H
    Macario, AJL
    Paulsen, I
    Pritchett, M
    Sowers, KR
    GENOME RESEARCH, 2002, 12 (04) : 532 - 542
  • [3] Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production
    Haveman, Shelley A.
    DiDonato, Raymond J., Jr.
    Villanueva, Laura
    Shelobolina, Evgenya S.
    Postier, Bradley L.
    Xu, Bo
    Liu, Anna
    Lovley, Derek R.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (14) : 4277 - 4284
  • [4] Genome-scale model of Rothia mucilaginosa predicts gene essentialities and reveals metabolic capabilities
    Leonidou, Nantia
    Ostyn, Lisa
    Coenye, Tom
    Crabbe, Aurelie
    Draeger, Andreas
    MICROBIOLOGY SPECTRUM, 2024, 12 (06):
  • [5] Genome analysis of Pseudomonas sp. 14A reveals metabolic capabilities to support epiphytic behavior
    Alejandro Medina-Salazar, Saul
    Cornejo-Granados, Fernanda
    Equihua-Medina, Edgar
    Ochoa-Leyva, Adrian
    Roberto Vallejo-Perez, Moises
    Xochil Vega-Manriquez, Delia
    Jarquin-Galvez, Ramon
    Castro-Rivera, Rigoberto
    Aguilar-Benitez, Gisela
    Pablo Lara-Avila, Jose
    WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 2022, 38 (03):
  • [6] Genome analysis of Pseudomonas sp. 14A reveals metabolic capabilities to support epiphytic behavior
    Saúl Alejandro Medina-Salazar
    Fernanda Cornejo-Granados
    Edgar Equihua-Medina
    Adrian Ochoa-Leyva
    Moisés Roberto Vallejo-Pérez
    Delia Xochil Vega-Manriquez
    Ramón Jarquin-Gálvez
    Rigoberto Castro-Rivera
    Gisela Aguilar-Benítez
    José Pablo Lara-Ávila
    World Journal of Microbiology and Biotechnology, 2022, 38
  • [7] Genome-scale metabolic modeling reveals key features of a minimal gene set
    Lachance, Jean-Christophe
    Matteau, Dominick
    Brodeur, Joelle
    Lloyd, Colton J.
    Mih, Nathan
    King, Zachary A.
    Knight, Thomas F.
    Feist, Adam M.
    Monk, Jonathan M.
    Palsson, Bernhard O.
    Jacques, Pierre-Etienne
    Rodrigue, Sebastien
    MOLECULAR SYSTEMS BIOLOGY, 2021, 17 (07)
  • [8] Genome Mining Reveals a Surprising Number of Sugar Reductases in Aspergillus niger
    Mueller, Astrid
    Xu, Li
    Heine, Claudia
    Flach, Tila
    Makela, Miia R.
    de Vries, Ronald P.
    JOURNAL OF FUNGI, 2023, 9 (12)
  • [9] Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks
    Larhlimi, Abdelhalim
    Basler, Georg
    Grimbs, Sergio
    Selbig, Joachim
    Nikoloski, Zoran
    BIOINFORMATICS, 2012, 28 (18) : I502 - I508
  • [10] Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria
    Roalkvam, Irene
    Dronen, Karine
    Stokke, Runar
    Daae, Frida L.
    Dahle, Hakon
    Steen, Ida H.
    FRONTIERS IN MICROBIOLOGY, 2015, 6