Modeling of shotgun sequencing of DNA plasmids using experimental and theoretical approaches

被引:0
|
作者
Sergey Shityakov
Elena Bencurova
Carola Förster
Thomas Dandekar
机构
[1] University of Würzburg,Department of Bioinformatics
[2] China Medical University Hospital,Department of Psychiatry
[3] Würzburg University Hospital,Department of Anesthesia and Critical Care
来源
关键词
Shotgun method; Sanger sequencing; Virtual sequencing; Polymerase chain reaction; Gene expression vectors; Synthetic biology;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Modeling of shotgun sequencing of DNA plasmids using experimental and theoretical approaches
    Shityakov, Sergey
    Bencurova, Elena
    Foerster, Carola
    Dandekar, Thomas
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [2] Reconstruction of plasmids by shotgun sequencing from environmental DNA: which bioinformatic workflow?
    Hilpert, Cecile
    Bricheux, Genevieve
    Debroas, Didier
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (03)
  • [3] A SYSTEM FOR SHOTGUN DNA SEQUENCING
    MESSING, J
    CREA, R
    SEEBURG, PH
    NUCLEIC ACIDS RESEARCH, 1981, 9 (02) : 309 - 321
  • [4] Private Shotgun DNA Sequencing
    Gholami, Ali
    Maddah-Alit, Mohammad Ali
    Motahari, Seyed Abolfazl
    2019 IEEE INTERNATIONAL SYMPOSIUM ON INFORMATION THEORY (ISIT), 2019, : 171 - 175
  • [5] Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
    Wendl, MC
    BULLETIN OF MATHEMATICAL BIOLOGY, 2006, 68 (01) : 179 - 196
  • [6] Occupancy Modeling of Coverage Distribution for Whole Genome Shotgun Dna Sequencing
    Michael C. Wendl
    Bulletin of Mathematical Biology, 2006, 68 : 179 - 196
  • [7] Information Theory of DNA Shotgun Sequencing
    Motahari, Abolfazl S.
    Bresler, Guy
    Tse, David N. C.
    IEEE TRANSACTIONS ON INFORMATION THEORY, 2013, 59 (10) : 6273 - 6289
  • [8] AN IMPROVED METHOD FOR SHOTGUN DNA SEQUENCING
    YASUDA, S
    NAKAYAMA, N
    JIKUYA, H
    SOEDA, E
    AGRICULTURAL AND BIOLOGICAL CHEMISTRY, 1985, 49 (05): : 1525 - 1526
  • [9] Loops in DNA: An overview of experimental and theoretical approaches
    J. -F. Allemand
    S. Cocco
    N. Douarche
    G. Lia
    The European Physical Journal E, 2006, 19 : 293 - 302
  • [10] DNA Looping in Prokaryotes: Experimental and Theoretical Approaches
    Cournac, Axel
    Plumbridge, Jacqueline
    JOURNAL OF BACTERIOLOGY, 2013, 195 (06) : 1109 - 1119