Filtering "genic" open reading frames from genomic DNA samples for advanced annotation

被引:0
|
作者
Sara D'Angelo
Nileena Velappan
Flavio Mignone
Claudio Santoro
Daniele Sblattero
Csaba Kiss
Andrew RM Bradbury
机构
[1] Los Alamos National Laboratory,Bioscience Division
[2] School of Pharmacy,Department of Structural Chemistry and Inorganic Stereochemistry
[3] University of Milan,Department of Medical Sciences and IRCAD
[4] University of Eastern Piedmont,undefined
来源
BMC Genomics | / 12卷
关键词
Signal Recognition Particle; Genic ORFs; Multiple Displacement Amplification; Nitrocefin; Ampicillin Concentration;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Filtering "genic" open reading frames from genomic DNA samples for advanced annotation
    D'Angelo, Sara
    Velappan, Nileena
    Mignone, Flavio
    Santoro, Claudio
    Sblattero, Daniele
    Kiss, Csaba
    Bradbury, Andrew R. M.
    BMC GENOMICS, 2011, 12
  • [2] Standardized annotation of translated open reading frames
    Mudge, Jonathan M.
    Ruiz-Orera, Jorge
    Prensner, John R.
    Brunet, Marie A.
    Calvet, Ferriol
    Jungreis, Irwin
    Gonzalez, Jose Manuel
    Magrane, Michele
    Martinez, Thomas F.
    Schulz, Jana Felicitas
    Yang, Yucheng T.
    Alba, M. Mar
    Aspden, Julie L.
    Baranov, Pavel V.
    Bazzini, Ariel A.
    Bruford, Elspeth
    Martin, Maria Jesus
    Calviello, Lorenzo
    Carvunis, Anne-Ruxandra
    Chen, Jin
    Couso, Juan Pablo
    Deutsch, Eric W.
    Flicek, Paul
    Frankish, Adam
    Gerstein, Mark
    Hubner, Norbert
    Ingolia, Nicholas T.
    Kellis, Manolis
    Menschaert, Gerben
    Moritz, Robert L.
    Ohler, Uwe
    Roucou, Xavier
    Saghatelian, Alan
    Weissman, Jonathan S.
    van Heesch, Sebastiaan
    NATURE BIOTECHNOLOGY, 2022, 40 (07) : 994 - 999
  • [3] Standardized annotation of translated open reading frames
    Jonathan M. Mudge
    Jorge Ruiz-Orera
    John R. Prensner
    Marie A. Brunet
    Ferriol Calvet
    Irwin Jungreis
    Jose Manuel Gonzalez
    Michele Magrane
    Thomas F. Martinez
    Jana Felicitas Schulz
    Yucheng T. Yang
    M. Mar Albà
    Julie L. Aspden
    Pavel V. Baranov
    Ariel A. Bazzini
    Elspeth Bruford
    Maria Jesus Martin
    Lorenzo Calviello
    Anne-Ruxandra Carvunis
    Jin Chen
    Juan Pablo Couso
    Eric W. Deutsch
    Paul Flicek
    Adam Frankish
    Mark Gerstein
    Norbert Hubner
    Nicholas T. Ingolia
    Manolis Kellis
    Gerben Menschaert
    Robert L. Moritz
    Uwe Ohler
    Xavier Roucou
    Alan Saghatelian
    Jonathan S. Weissman
    Sebastiaan van Heesch
    Nature Biotechnology, 2022, 40 : 994 - 999
  • [4] Selecting open reading frames from DNA
    Zacchi, P
    Sblattero, D
    Florian, F
    Marzari, R
    Bradbury, ARM
    GENOME RESEARCH, 2003, 13 (05) : 980 - 990
  • [5] Automated identification of putative methyltransferases from genomic open reading frames
    Katz, JE
    Dlakic, M
    Clarke, S
    MOLECULAR & CELLULAR PROTEOMICS, 2003, 2 (08) : 525 - 540
  • [6] Automated Prediction and Annotation of Small Open Reading Frames in Microbial Genomes
    Durrant, Matthew G.
    Bhatt, Ami S.
    CELL HOST & MICROBE, 2021, 29 (01) : 121 - +
  • [7] OpenVar: functional annotation of variants in non-canonical open reading frames
    Brunet, Marie A.
    Leblanc, Sebastien
    Roucou, Xavier
    CELL AND BIOSCIENCE, 2022, 12 (01):
  • [8] Computational discovery and annotation of conserved small open reading frames in fungal genomes
    Mat-Sharani, Shuhaila
    Firdaus-Raih, Mohd
    BMC BIOINFORMATICS, 2019, 19 (Suppl 13)
  • [9] Accurate annotation of human protein-coding small open reading frames
    Thomas F. Martinez
    Qian Chu
    Cynthia Donaldson
    Dan Tan
    Maxim N. Shokhirev
    Alan Saghatelian
    Nature Chemical Biology, 2020, 16 : 458 - 468
  • [10] Computational discovery and annotation of conserved small open reading frames in fungal genomes
    Shuhaila Mat-Sharani
    Mohd Firdaus-Raih
    BMC Bioinformatics, 19