Parallelized short read assembly of large genomes using de Bruijn graphs

被引：0
|
作者：
Yongchao Liu
Bertil Schmidt
Douglas L Maskell
机构：
[1] Nanyang Technological University,School of Computer Engineering
[2] Johannes Gutenberg University Mainz,Institut für Informatik
来源：
BMC Bioinformatics | / 12卷
关键词：
Execution Time; Message Passing Interface; Large Genome; Execution Speed; Assembly Quality;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Parallelized short read assembly of large genomes using de Bruijn graphs
    Liu, Yongchao
    Schmidt, Bertil
    Maskell, Douglas L.
    BMC BIOINFORMATICS, 2011, 12
  • [2] Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    Zerbino, Daniel R.
    Birney, Ewan
    GENOME RESEARCH, 2008, 18 (05) : 821 - 829
  • [3] Read mapping on de Bruijn graphs
    Limasset, Antoine
    Cazaux, Bastien
    Rivals, Eric
    Peterlongo, Pierre
    BMC BIOINFORMATICS, 2016, 17
  • [4] Read mapping on de Bruijn graphs
    Antoine Limasset
    Bastien Cazaux
    Eric Rivals
    Pierre Peterlongo
    BMC Bioinformatics, 17
  • [5] Compact representation of k-mer de Bruijn graphs for genome read assembly
    Rodland, Einar Andreas
    BMC BIOINFORMATICS, 2013, 14
  • [6] Compact representation of k-mer de Bruijn graphs for genome read assembly
    Einar Andreas Rødland
    BMC Bioinformatics, 14
  • [7] Parallelized De Bruijn graph construction and simplification for genome assembly
    Cheng, J.-F. (jiefengcheng@gmail.com), 1600, Chinese Academy of Sciences (24):
  • [8] DNA Assembly with De Bruijn Graphs Using an FPGA Platform
    Poirier, Carl
    Gosselin, Benoit
    Fortier, Paul
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 15 (03) : 1003 - 1009
  • [9] De novo assembly and genotyping of variants using colored de Bruijn graphs
    Zamin Iqbal
    Mario Caccamo
    Isaac Turner
    Paul Flicek
    Gil McVean
    Nature Genetics, 2012, 44 : 226 - 232
  • [10] DNA Assembly with de Bruijn Graphs on FPGA
    Poirier, Carl
    Gosselin, Benoit
    Fortier, Paul
    2015 37TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), 2015, : 6489 - 6492
12345