Structure of outer membrane protein G in lipid bilayers

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作者
Joren S. Retel
Andrew J. Nieuwkoop
Matthias Hiller
Victoria A. Higman
Emeline Barbet-Massin
Jan Stanek
Loren B. Andreas
W. Trent Franks
Barth-Jan van Rossum
Kutti R. Vinothkumar
Lieselotte Handel
Gregorio Giuseppe de Palma
Benjamin Bardiaux
Guido Pintacuda
Lyndon Emsley
Werner Kühlbrandt
Hartmut Oschkinat
机构
[1] Leibniz-Institut für Molekulare Pharmakologie,Centre de RMN à Très Hauts Champs, Institute des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1)
[2] Université de Lyon,Unité de Bioinformatique Structurale, CNRS UMR 3528
[3] Max-Planck-Institut für Biophysik,Institut des Sciences et Ingénierie Chimiques
[4] Institut Pasteur,undefined
[5] Ecole Polytechnique Fédérale de Lausanne,undefined
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摘要
β-barrel proteins mediate nutrient uptake in bacteria and serve vital functions in cell signaling and adhesion. For the 14-strand outer membrane protein G of Escherichia coli, opening and closing is pH-dependent. Different roles of the extracellular loops in this process were proposed, and X-ray and solution NMR studies were divergent. Here, we report the structure of outer membrane protein G investigated in bilayers of E. coli lipid extracts by magic-angle-spinning NMR. In total, 1847 inter-residue 1H–1H and 13C–13C distance restraints, 256 torsion angles, but no hydrogen bond restraints are used to calculate the structure. The length of β-strands is found to vary beyond the membrane boundary, with strands 6–8 being the longest and the extracellular loops 3 and 4 well ordered. The site of barrel closure at strands 1 and 14 is more disordered than most remaining strands, with the flexibility decreasing toward loops 3 and 4. Loop 4 presents a well-defined helix.
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