A robust and accurate single-cell data trajectory inference method using ensemble pseudotime

被引:0
|
作者
Yifan Zhang
Duc Tran
Tin Nguyen
Sergiu M. Dascalu
Frederick C. Harris
机构
[1] University of Nevada,Department of Computer Science and Engineering
[2] Reno,undefined
来源
关键词
Single cell; Pathway; Trajectory inference; Pseudotime;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] A robust and accurate single-cell data trajectory inference method using ensemble pseudotime
    Zhang, Yifan
    Tran, Duc
    Nguyen, Tin
    Dascalu, Sergiu M.
    Harris, Frederick C.
    BMC BIOINFORMATICS, 2023, 24 (01)
  • [2] DTFLOW: Inference and Visualization of Single-cell Pseudotime Trajectory Using Diffusion Propagation
    Wei, Jiangyong
    Zhou, Tianshou
    Zhang, Xinan
    Tian, Tianhai
    GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 19 (02) : 306 - 318
  • [3] DTFLOW: Inference and Visualization of Single-cell Pseudotime Trajectory Using Diffusion Propagation
    Jiangyong Wei
    Tianshou Zhou
    Xinan Zhang
    Tianhai Tian
    Genomics,Proteomics & Bioinformatics, 2021, (02) : 306 - 318
  • [4] DTFLOW: Inference and Visualization of Single-cell Pseudotime Trajectory Using Diffusion Propagation
    Jiangyong Wei
    Tianshou Zhou
    Xinan Zhang
    Tianhai Tian
    Genomics,Proteomics & Bioinformatics, 2021, 19 (02) : 306 - 318
  • [5] scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data
    Smolander, Johannes
    Junttila, Sini
    Venalainen, Mikko S.
    Elo, Laura L.
    BIOINFORMATICS, 2022, 38 (05) : 1328 - 1335
  • [6] TIPS: trajectory inference of pathway significance through pseudotime comparison for functional assessment of single-cell RNAseq data
    Zheng, Zihan
    Xin, Qiu
    Wu, Haiyang
    Chang, Ling
    Tang, Xiangyu
    Zou, Liyun
    Li, Jingyi
    Wu, Yuzhang
    Zhou, Jianzhi
    Shan, Jiang
    Wan, Ying
    Ni, Qingshan
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (05)
  • [7] Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
    Street, Kelly
    Risso, Davide
    Fletcher, Russell B.
    Das, Diya
    Ngai, John
    Yosef, Nir
    Purdom, Elizabeth
    Dudoit, Sandrine
    BMC GENOMICS, 2018, 19
  • [8] A Novel Trajectory Inference Method on Single-Cell Gene Expression Data
    Tang, Daoxu
    Lu, Xinguo
    Jiang, Kaibao
    Sun, Fengxu
    Li, Jinxin
    INTELLIGENT COMPUTING THEORIES AND APPLICATION, ICIC 2022, PT II, 2022, 13394 : 364 - 373
  • [9] Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
    Kelly Street
    Davide Risso
    Russell B. Fletcher
    Diya Das
    John Ngai
    Nir Yosef
    Elizabeth Purdom
    Sandrine Dudoit
    BMC Genomics, 19
  • [10] A descriptive marker gene approach to single-cell pseudotime inference
    Campbell, Kieran R.
    Yau, Christopher
    BIOINFORMATICS, 2019, 35 (01) : 28 - 35