MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing

被引:0
|
作者
Hardik I. Parikh
Vishal N. Koparde
Steven P. Bradley
Gregory A. Buck
Nihar U. Sheth
机构
[1] Virginia Commonwealth University,Department of Microbiology and Immunology
[2] Virginia Commonwealth University,Center for the Study of Biological Complexity
来源
关键词
16S rRNA; microbiome; paired-end sequencing; quality filtering; pre-processing;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing
    Parikh, Hardik I.
    Koparde, Vishal N.
    Bradley, Steven P.
    Buck, Gregory A.
    Sheth, Nihar U.
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [2] IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data
    Mohamed Mysara
    Natalie Leys
    Jeroen Raes
    Pieter Monsieurs
    [J]. BMC Bioinformatics, 17
  • [3] IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data
    Mysara, Mohamed
    Leys, Natalie
    Raes, Jeroen
    Monsieurs, Pieter
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [4] Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys
    Werner, Jeffrey J.
    Zhou, Dennis
    Caporaso, J. Gregory
    Knight, Rob
    Angenent, Largus T.
    [J]. ISME JOURNAL, 2012, 6 (07): : 1273 - 1276
  • [5] Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys
    Jeffrey J Werner
    Dennis Zhou
    J Gregory Caporaso
    Rob Knight
    Largus T Angenent
    [J]. The ISME Journal, 2012, 6 : 1273 - 1276
  • [6] Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads
    Bartram, Andrea K.
    Lynch, Michael D. J.
    Stearns, Jennifer C.
    Moreno-Hagelsieb, Gabriel
    Neufeld, Josh D.
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (11) : 3846 - 3852
  • [7] IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries
    Jeraldo, Patricio
    Kalari, Krishna
    Chen, Xianfeng
    Bhavsar, Jaysheel
    Mangalam, Ashutosh
    White, Bryan
    Nelson, Heidi
    Kocher, Jean-Pierre
    Chia, Nicholas
    [J]. PLOS ONE, 2014, 9 (12):
  • [8] A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology
    Eren, A. Murat
    Vineis, Joseph H.
    Morrison, Hilary G.
    Sogin, Mitchell L.
    [J]. PLOS ONE, 2013, 8 (06):
  • [9] MarkerMAG: linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads
    Song, Weizhi
    Zhang, Shan
    Thomas, Torsten
    [J]. BIOINFORMATICS, 2022, 38 (15) : 3684 - 3688
  • [10] Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads (vol 77, pg 3846, 2011)
    Bartram, Andrea K.
    Lynch, Michael D. J.
    Stearns, Jennifer C.
    Moreno-Hagelsieb, Gabriel
    Neufeld, Josh D.
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (15) : 5569 - 5569