Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing

被引:0
|
作者
Rodrigo Gouvêa Taketani
Amanda Barbosa Lima
Ederson da Conceição Jesus
Wenceslau Geraldes Teixeira
James M. Tiedje
Siu Mui Tsai
机构
[1] Universidade de São Paulo,Laboratory of Cellular and Molecular Biology, Centro de Energia Nuclear na Agricultura
[2] Michigan State University,Department of Soil and Crop Sciences, Center for Microbial Ecology
[3] Embrapa Meio Ambiente,Laboratório de Microbiologia Ambiental
[4] EMBRAPA Agrobiology,undefined
[5] EMBRAPA Western Amazon,undefined
来源
Antonie van Leeuwenhoek | 2013年 / 104卷
关键词
Dark earth; Amazonian soils; Land use; Carbon stock;
D O I
暂无
中图分类号
学科分类号
摘要
Biochar (BC) is a common minor constituent of soils and is usually derived from the burning of wood materials. In the case of Amazonian dark earth (ADE) soils, the increased amount of this material is believed to be due to anthropogenic action by ancient indigenous populations. In this study, we use 16S rRNA gene pyrosequencing to assess the bacterial diversity observed in the BC found in ADEs as well as in the dark earth itself and the adjacent Acrisol. Samples were taken from two sites, one cultivated with manioc and one with secondary forest cover. Analyses revealed that the community structure found in each sample had unique features. At a coarse phylogenetic resolution, the most abundant phyla in all sequence libraries were Actinobacteria, Acidobacteria, Verrucomicrobia and Proteobacteria that were present in similar relative abundance across all samples. However, the class composition varied between them highlighting the difference between the Acrisol and the remaining samples. This result was also corroborated by the comparison of the OTU composition (at 97 % identity). Also, soil coverage has shown an effect over the community structure observed in all samples. This pattern was found to be significant through unweighted UniFrac as well as P tests. These results indicate that, although the ADEs are found in patches within the Acrisols, the contrasting characteristics found between them led to the development of significantly different communities.
引用
收藏
页码:233 / 242
页数:9
相关论文
共 50 条
  • [1] Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing
    Taketani, Rodrigo Gouvea
    Lima, Amanda Barbosa
    Jesus, Ederson da Conceicao
    Teixeira, Wenceslau Geraldes
    Tiedje, James M.
    Tsai, Siu Mui
    [J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2013, 104 (02): : 233 - 242
  • [2] Bacterial Community Structure of Autotrophic Denitrification Biocathode by 454 Pyrosequencing of the 16S rRNA Gene
    Yong Xiao
    Yue Zheng
    Song Wu
    Zhao-Hui Yang
    Feng Zhao
    [J]. Microbial Ecology, 2015, 69 : 492 - 499
  • [3] Bacterial Community Structure of Autotrophic Denitrification Biocathode by 454 Pyrosequencing of the 16S rRNA Gene
    Xiao, Yong
    Zheng, Yue
    Wu, Song
    Yang, Zhao-Hui
    Zhao, Feng
    [J]. MICROBIAL ECOLOGY, 2015, 69 (03) : 492 - 499
  • [4] Bacterial Communities in Marine Aerosols Revealed by 454 Pyrosequencing of the 16S rRNA Gene
    Xia, Xiaomin
    Wang, Jianjun
    Ji, Jiabin
    Zhang, Jiexia
    Chen, Liqi
    Zhang, Rui
    [J]. JOURNAL OF THE ATMOSPHERIC SCIENCES, 2015, 72 (08) : 2997 - 3008
  • [5] Bacterial communities of Beijing surface waters as revealed by 454 pyrosequencing of the 16S rRNA gene
    Wei, Yu-Mei
    Wang, Jing-Qi
    Liu, Ting-Ting
    Kong, Wei-Wen
    Chen, Nan
    He, Xiao-Qing
    Jin, Yi
    [J]. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2015, 22 (16) : 12605 - 12614
  • [6] Bacterial communities of Beijing surface waters as revealed by 454 pyrosequencing of the 16S rRNA gene
    Yu-Mei Wei
    Jing-Qi Wang
    Ting-Ting Liu
    Wei-Wen Kong
    Nan Chen
    Xiao-Qing He
    Yi Jin
    [J]. Environmental Science and Pollution Research, 2015, 22 : 12605 - 12614
  • [7] Bacterial community composition in the gut content of Lampetra japonica revealed by 16S rRNA gene pyrosequencing
    Zuo, Yu
    Xie, Wenfang
    Pang, Yue
    Li, Tiesong
    Li, Qingwei
    Li, Yingying
    [J]. PLOS ONE, 2017, 12 (12):
  • [8] Bacterial community variations in an alfalfa- rice rotation system revealed by 16S rRNA gene 454-pyrosequencing
    Lopes, Ana R.
    Manaia, Celia M.
    Nunes, Olga C.
    [J]. FEMS MICROBIOLOGY ECOLOGY, 2014, 87 (03) : 650 - 663
  • [9] Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome
    Carlos W Nossa
    William E Oberdorf
    Jφrn A Aas
    Bruce J Paster
    Todd Z DeSantis
    Eoin L Brodie
    Daniel Malamud
    Michael A Poles
    [J]. World Journal of Gastroenterology, 2010, 16 (33) : 4135 - 4144
  • [10] Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome
    Nossa, Carlos W.
    Oberdorf, William E.
    Yang, Liying
    Aas, Jorn A.
    Paster, Bruce J.
    DeSantis, Todd Z.
    Brodie, Eoin L.
    Malamud, Daniel
    Poles, Michael A.
    Pei, Zhiheng
    [J]. WORLD JOURNAL OF GASTROENTEROLOGY, 2010, 16 (33) : 4135 - 4144