Tailored graphical lasso for data integration in gene network reconstruction

被引:0
|
作者
Camilla Lingjærde
Tonje G. Lien
Ørnulf Borgan
Helga Bergholtz
Ingrid K. Glad
机构
[1] University of Cambridge,MRC Biostatistics Unit
[2] Oslo University Hospital,Department of Cancer Genetics, Institute for Cancer Research
[3] University of Oslo,Department of Mathematics
来源
关键词
Graphical lasso; Weighted graphical lasso; High-dimensional inference; Network models; Genomics; Multiomics; Gene networks; Protein–protein interaction networks; Cancer genomics; Integrative analysis;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Tailored graphical lasso for data integration in gene network reconstruction
    Lingjaerde, Camilla
    Lien, Tonje G.
    Borgan, Ornulf
    Bergholtz, Helga
    Glad, Ingrid K.
    BMC BIOINFORMATICS, 2021, 22 (01)
  • [2] Application of graphical lasso in estimating network structure in gene set
    Huang, Yu-Jyun
    Lu, Tzu-Pin
    Hsiao, Chuhsing Kate
    ANNALS OF TRANSLATIONAL MEDICINE, 2020, 8 (23)
  • [3] Weighted lasso in graphical gaussian modeling for large gene network estimation based on microarray data
    Shimamura, Teppei
    Imoto, Seiya
    Yamaguchi, Rui
    Miyano, Satoru
    GENOME INFORMATICS 2007, VOL 19, 2007, 19 : 142 - 153
  • [4] Network analysis with multi-omics data using graphical LASSO
    Park, Jaehyun
    Won, Sungho
    GENETIC EPIDEMIOLOGY, 2020, 44 (05) : 509 - 509
  • [5] Coherent Graphical Lasso for Brain Network Discovery
    Yin, Hang
    Kong, Xiangnan
    Liu, Xinyue
    2018 IEEE INTERNATIONAL CONFERENCE ON DATA MINING (ICDM), 2018, : 1392 - 1397
  • [6] On using kernel integration by graphical LASSO to study partial correlations between heterogeneous data sets
    Norgaard, Sarah Kristine
    Linder-Steinlein, Kristoffer
    Eliasen, Anders Ulrik
    Stokholm, Jakob
    Chawes, Bo L.
    Bonnelykke, Klaus
    Bisggard, Hans
    Smilde, Age K.
    Rasmussen, Morten Arendt
    JOURNAL OF CHEMOMETRICS, 2021, 35 (10)
  • [7] Weighted Lasso with Data Integration
    Bergersen, Linn Cecilie
    Glad, Ingrid K.
    Lyng, Heidi
    STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY, 2011, 10 (01)
  • [8] Analysis of Twitter data with the Bayesian fused graphical lasso
    Aflakparast, Mehran
    de Gunst, Mathisca
    van Wieringen, Wessel
    PLOS ONE, 2020, 15 (07):
  • [9] Gene Network Reconstruction by Integration of Prior Biological Knowledge
    Li, Yupeng
    Jackson, Scott A.
    G3-GENES GENOMES GENETICS, 2015, 5 (06): : 1075 - 1079
  • [10] Integrating Prior Biological Knowledge and Graphical LASSO for Network Inference
    Zuo, Yiming
    Yu, Guoqiang
    Ressom, Habtom W.
    PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 2015, : 1543 - 1547