The ongoing evolution of UShER during the SARS-CoV-2 pandemic

被引:0
|
作者
Angie Hinrichs
Cheng Ye
Yatish Turakhia
Russell Corbett-Detig
机构
[1] University of California,Genomics Institute
[2] Santa Cruz,Department of Electrical and Computer Engineering
[3] University of California,Department of Biomolecular Engineering
[4] San Diego,undefined
[5] University of California,undefined
[6] Santa Cruz,undefined
来源
Nature Genetics | 2024年 / 56卷
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摘要
While the number of SARS-CoV-2 genome sequences grew to over 15 million, the Ultrafast Sample placement on Existing tRees (UShER) tool suite maintained a comprehensive phylogenetic tree in near real time. This experience, and critical performance improvements throughout the pandemic, provide valuable lessons for rapidly scaling analyses.
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页码:4 / 7
页数:3
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