Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing

被引：0
|
作者：
Siddarth Selvaraj
Jesse R Dixon
Vikas Bansal
Bing Ren
机构：
[1] Ludwig Institute for Cancer Research,Department of Cellular and Molecular Medicine
[2] Bioinformatics and Systems Biology Graduate Program,undefined
[3] University of California,undefined
[4] San Diego,undefined
[5] Medical Scientist Training Program,undefined
[6] University of California,undefined
[7] San Diego,undefined
[8] Scripps Translational Science Institute and Scripps Health,undefined
[9] University of California,undefined
[10] San Diego,undefined
[11] School of Medicine,undefined
[12] Institute of Genomic Medicine,undefined
[13] University of California,undefined
[14] San Diego,undefined
来源：
Nature Biotechnology | 2013年 / 31卷
关键词：
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Genetic variants are grouped into chromosome-spanning haplotypes with the help of chromatin-interaction data.
引用
收藏
页码：1111 / 1118
页数：7
相关论文
共 50 条
  • [1] Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
    Selvaraj, Siddarth
    Dixon, Jesse R.
    Bansal, Vikas
    Ren, Bing
    [J]. NATURE BIOTECHNOLOGY, 2013, 31 (12) : 1111 - +
  • [2] Analysis of the breadwheat genome using whole-genome shotgun sequencing
    Brenchley, Rachel
    Spannagl, Manuel
    Pfeifer, Matthias
    Barker, Gary L. A.
    D'Amore, Rosalinda
    Allen, Alexandra M.
    McKenzie, Neil
    Kramer, Melissa
    Kerhornou, Arnaud
    Bolser, Dan
    Kay, Suzanne
    Waite, Darren
    Trick, Martin
    Bancroft, Ian
    Gu, Yong
    Huo, Naxin
    Luo, Ming-Cheng
    Sehgal, Sunish
    Gill, Bikram
    Kianian, Sharyar
    Anderson, Olin
    Kersey, Paul
    Dvorak, Jan
    McCombie, W. Richard
    Hall, Anthony
    Mayer, Klaus F. X.
    Edwards, Keith J.
    Bevan, Michael W.
    Hall, Neil
    [J]. NATURE, 2012, 491 (7426) : 705 - 710
  • [3] Human whole-genome shotgun sequencing
    Weber, JL
    Myers, EW
    [J]. GENOME RESEARCH, 1997, 7 (05) : 401 - 409
  • [4] Analysis of the bread wheat genome using whole-genome shotgun sequencing
    Rachel Brenchley
    Manuel Spannagl
    Matthias Pfeifer
    Gary L. A. Barker
    Rosalinda D’Amore
    Alexandra M. Allen
    Neil McKenzie
    Melissa Kramer
    Arnaud Kerhornou
    Dan Bolser
    Suzanne Kay
    Darren Waite
    Martin Trick
    Ian Bancroft
    Yong Gu
    Naxin Huo
    Ming-Cheng Luo
    Sunish Sehgal
    Bikram Gill
    Sharyar Kianian
    Olin Anderson
    Paul Kersey
    Jan Dvorak
    W. Richard McCombie
    Anthony Hall
    Klaus F. X. Mayer
    Keith J. Edwards
    Michael W. Bevan
    Neil Hall
    [J]. Nature, 2012, 491 : 705 - 710
  • [5] InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms
    Patel, Anand
    Edge, Peter
    Selvaraj, Siddarth
    Bansal, Vikas
    Bafna, Vineet
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (12) : e111
  • [6] A whole-genome shotgun approach to human reference genome sequencing
    Morishita, Shinichi
    [J]. NATURE REVIEWS GENETICS, 2024, 25 (04) : 236 - 236
  • [7] A whole-genome shotgun approach to human reference genome sequencing
    Shinichi Morishita
    [J]. Nature Reviews Genetics, 2024, 25 : 236 - 236
  • [8] Bioinformatics for whole-genome shotgun sequencing of microbial communities
    Chen, K
    Pachter, L
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2005, 1 (02) : 106 - 112
  • [9] Against a whole-genome shotgun
    Green, P
    [J]. GENOME RESEARCH, 1997, 7 (05): : 410 - 417
  • [10] Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
    Reyes-Chin-Wo, Sebastian
    Wang, Zhiwen
    Yang, Xinhua
    Kozik, Alexander
    Arikit, Siwaret
    Song, Chi
    Xia, Liangfeng
    Froenicke, Lutz
    Lavelle, Dean O.
    Truco, Maria-Jose
    Xia, Rui
    Zhu, Shilin
    Xu, Chunyan
    Xu, Huaqin
    Xu, Xun
    Cox, Kyle
    Korf, Ian
    Meyers, Blake C.
    Michelmore, Richard W.
    [J]. NATURE COMMUNICATIONS, 2017, 8
12345