Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094T), a moderately halophilic member of the Roseobacter clade

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作者
Thomas Riedel
Stefan Spring
Anne Fiebig
Jörn Petersen
Nikos C. Kyrpides
Markus Göker
Hans-Peter Klenk
机构
[1] Sorbonne Universités,UPMC Univ Paris 06, USR 3579, LBBM, Observatoire Océanologique
[2] CNRS,USR 3579, LBBM, Observatoire Océanologique
[3] DSMZ - German Collection of Microorganisms and Cell Cultures,Leibniz Institute
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关键词
aerobic; chemoheterotrophic; rod-shaped; photosynthesis; extrachromosomal elements; OmniLog phenotyping; clade;
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摘要
Salipiger mucosus Martínez-Cànovas et al. 2004 is the type species of the genus Salipiger, a moderately halophilic and exopolysaccharide-producing representative of the Roseobacter lineage within the alphaproteobacterial family Rhodobacteraceae. Members of this family were shown to be the most abundant bacteria especially in coastal and polar waters, but were also found in microbial mats and sediments. Here we describe the features of the S. mucosus strain DSM 16094T together with its genome sequence and annotation. The 5,689,389-bp genome sequence consists of one chromosome and several extrachromosomal elements. It contains 5,650 protein-coding genes and 95 RNA genes. The genome of S. mucosus DSM 16094T was sequenced as part of the activities of the Transregional Collaborative Research Center 51 (TRR51) funded by the German Research Foundation (DFG).
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页码:1331 / 1343
页数:12
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    Kyrpides, Nikos C.
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    Klenk, Hans-Peter
    [J]. STANDARDS IN GENOMIC SCIENCES, 2014, 9 (03): : 1331 - 1343
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    [J]. Standards in Genomic Sciences, 2013, 8 : 480 - 490
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    [J]. STANDARDS IN GENOMIC SCIENCES, 2013, 9 (01): : 117 - 127
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    Teshima, Hazuki
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    Davenport, Karen
    Daligault, Hajnalka
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    Gu, Wei
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    [J]. STANDARDS IN GENOMIC SCIENCES, 2013, 8 (03): : 389 - 402
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    Beyersmann, Paul G.
    Chertkov, Olga
    Petersen, Joern
    Fiebig, Anne
    Chen, Amy
    Pati, Amrita
    Ivanova, Natalia
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    Goodwin, Lynne A.
    Chain, Patrick
    Detter, John C.
    Rohde, Manfred
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    [J]. STANDARDS IN GENOMIC SCIENCES, 2013, 8 (03): : 403 - 419
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    Nikos C. Kyrpides
    Markus Göker
    Hans-Peter Klenk
    [J]. Standards in Genomic Sciences, 2013, 9 : 117 - 127
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