The effect of ligands on the thermal stability of sulfotransferases: a molecular dynamics simulation study

被引:0
|
作者
Pu-pu Zhang
Li Zhao
Shi-yang Long
Pu Tian
机构
[1] Jilin University,School of Life Sciences
[2] Jilin University,Key Laboratory for Molecular Enzymology and Engineering, the Ministry of Education
来源
关键词
Human cytosolic sulfotransferase 2A1; Molecular dynamic simulations; Thermal stability;
D O I
暂无
中图分类号
学科分类号
摘要
Human cytosolic sulfotransferases (hSULTs) are important phase II metabolic enzymes. They catalyze transfer of the sulfuryl-group (-SO3) from 3′-phosphoadenosine 5′-phosphosulfate (PAPS) to the hydroxyl or primary amine moieties of a large number of endogenous and xenobiotic substrates. Broad selectivity and specificity of binding and activity within the sulfortransferases family could be detected by thermal denaturation assays, which have been made more and more suitable for high throughput screening based on recent technical advances. Here molecular dynamics simulations were used to explore the effect of the cofactor (PAPS) and substrate (LCA) on the thermal stability of the enzyme. It was found that the apo-enzyme unfolded fastest upon heating. The holo-enzyme with bound substrate LCA unfolded slowest. This thermo-denaturation order is consistent with that observed in experiments. Further it was found that the cofactor and substrate will pronouncedly increase the thermal stability of the active pocket regions that interact directly with the ligands. In addition, cofactor and substrate show noticeable synergy effect on the thermal stability of the enzyme.
引用
收藏
相关论文
共 50 条
  • [1] The effect of ligands on the thermal stability of sulfotransferases: a molecular dynamics simulation study
    Zhang, Pu-pu
    Zhao, Li
    Long, Shi-yang
    Tian, Pu
    [J]. JOURNAL OF MOLECULAR MODELING, 2015, 21 (04) : 1 - 7
  • [2] The impact of ligands on the structure and flexibility of sulfotransferases: a molecular dynamics simulation study
    Li Zhao
    Pupu Zhang
    Shiyang Long
    Linlin Wang
    Pu Tian
    [J]. Journal of Molecular Modeling, 2015, 21
  • [3] The impact of ligands on the structure and flexibility of sulfotransferases: a molecular dynamics simulation study
    Zhao, Li
    Zhang, Pupu
    Long, Shiyang
    Wang, Linlin
    Tian, Pu
    [J]. JOURNAL OF MOLECULAR MODELING, 2015, 21 (08)
  • [4] MOLECULAR DYNAMICS SIMULATION STUDY ON THE EFFECT OF WATER ON THE THERMAL STABILITY OF COLLAGEN POLYPEPTIDE
    Zhang, Wenhua
    He, Qiang
    Liao, Xuepin
    Shi, Bi
    [J]. JOURNAL OF THE AMERICAN LEATHER CHEMISTS ASSOCIATION, 2009, 104 (07): : 244 - 250
  • [5] Molecular dynamics simulation of thermal stability of nanocrystalline vanadium
    WEI Mingzhi1
    2. Department of Applied Physics
    [J]. Science China Technological Sciences, 2006, (04) : 400 - 407
  • [6] Molecular dynamics simulation of thermal stability of nanocrystalline vanadium
    Mingzhi Wei
    Shifang Xiao
    Xiaojian Yuan
    Wangyu Hu
    [J]. Science in China Series E: Technological Sciences, 2006, 49 : 400 - 407
  • [7] Molecular dynamics simulation of thermal stability of nanocrystalline vanadium
    Wei Mingzhi
    Xiao Shifang
    Yuan Xiaojian
    Hu Wangyu
    [J]. SCIENCE IN CHINA SERIES E-TECHNOLOGICAL SCIENCES, 2006, 49 (04): : 400 - 407
  • [8] Study of thermal stability of fullerenes by molecular dynamics
    Zhang, W
    Xu, ZJ
    Zhu, ZY
    [J]. INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2005, 19 (15-17): : 2892 - 2898
  • [9] Thermal stability of marks gold nanoparticles: A molecular dynamics simulation
    Jia, Yanlin
    Li, Siqi
    Qi, Weihong
    Wang, Mingpu
    Li, Zhou
    Wang, Zhixing
    [J]. INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2017, 31 (07):
  • [10] Effect of gold nanoparticle on stability of the DNA molecule: A study of molecular dynamics simulation
    Izanloo, Cobra
    [J]. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 2017, 36 (09): : 571 - 582