Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing

被引：0
|
作者：
Yu Liu
Mehmet Koyutürk
Sean Maxwell
Min Xiang
Martina Veigl
Richard S Cooper
Bamidele O Tayo
Li Li
Thomas LaFramboise
Zhenghe Wang
Xiaofeng Zhu
Mark R Chance
机构：
[1] Case Western Reserve University,Center for Proteomics and Bioinformatics
[2] Case Western Reserve University,Department of Electrical Engineering & Computer Science
[3] Case Western Reserve University,Case Comprehensive Cancer Center
[4] Case Western Reserve University,Department of Genetics and Genome Science
[5] Case Western Reserve University,Department of Family Medicine and Community Health
[6] Case Western Reserve University,Department of General Medical Sciences
[7] Case Western Reserve University,Department of Epidemiology and Biostatistics
[8] Suzhou Health College,Department of Pharmacy
[9] Loyola University Chicago,Department of Public Health Sciences, Stritch School of Medicine
来源：
BMC Genomics | / 15卷
关键词：
Missing common sequence; De novo assembling; Next generation sequencing; Expression in brain; Transcription factor binding; Genome evolution;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing
    Liu, Yu
    Koyuturk, Mehmet
    Maxwell, Sean
    Xiang, Min
    Veigl, Martina
    Cooper, Richard S.
    Tayo, Bamidele O.
    Li, Li
    LaFramboise, Thomas
    Wang, Zhenghe
    Zhu, Xiaofeng
    Chance, Mark R.
    BMC GENOMICS, 2014, 15
  • [2] PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing
    Long, Quan
    Jeffares, Daniel C.
    Zhang, Qingrun
    Ye, Kai
    Nizhynska, Viktoria
    Ning, Zemin
    Tyler-Smith, Chris
    Nordborg, Magnus
    PLOS ONE, 2011, 6 (01):
  • [3] Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples
    Boitard, Simon
    Schloetterer, Christian
    Nolte, Viola
    Pandey, Ram Vinay
    Futschik, Andreas
    MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (09) : 2177 - 2186
  • [4] Next Generation Sequencing of Pooled Samples: Guideline for Variants’ Filtering
    Santosh Anand
    Eleonora Mangano
    Nadia Barizzone
    Roberta Bordoni
    Melissa Sorosina
    Ferdinando Clarelli
    Lucia Corrado
    Filippo Martinelli Boneschi
    Sandra D’Alfonso
    Gianluca De Bellis
    Scientific Reports, 6
  • [5] Next Generation Sequencing of Pooled Samples: Guideline for Variants' Filtering
    Anand, Santosh
    Mangano, Eleonora
    Barizzone, Nadia
    Bordoni, Roberta
    Sorosina, Melissa
    Clarelli, Ferdinando
    Corrado, Lucia
    Boneschi, Filippo Martinelli
    D'Alfonso, Sandra
    De Bellis, Gianluca
    SCIENTIFIC REPORTS, 2016, 6
  • [6] RHCE genotyping using next generation sequencing: Allele specific reference sequences
    Tounsi, Wajnat A.
    Halawani, Amr J.
    Sillence, Kelly A.
    Kiernan, Michele
    Avent, Neil D.
    Madgett, Tracey E.
    TRANSFUSION, 2025, 65 (02) : 363 - 374
  • [7] The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
    Futschik, Andreas
    Schloetterer, Christian
    GENETICS, 2010, 186 (01) : 207 - 218
  • [8] Analysis of the sequencing quality of next-generation sequencing for the entire mitochondrial genome in decomposed human samples
    Lee, Seung Eun
    Kim, Ga Eun
    Lee, Dong Yeon
    Kim, Hajin
    Kim, Moon-Young
    INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2025, 139 (02) : 551 - 562
  • [9] Next-generation sequencing analysis with a population-specific human reference genome
    Suzuki, Tomohisa
    Ninomiya, Kota
    Funayama, Takamitsu
    Okamura, Yasunobu
    Tadaka, Shu
    Tohoku Med Megabank Project Study Grp, Kengo
    Yamamoto, Masayuki
    Kure, Shigeo
    Kikuchi, Atsuo
    Tamiya, Gen
    Takayama, Jun
    GENES & GENETIC SYSTEMS, 2024, 99
  • [10] Detecting structural variations in the human genome using next generation sequencing
    Xi, Ruibin
    Kim, Tae-Min
    Park, Peter J.
    BRIEFINGS IN FUNCTIONAL GENOMICS, 2010, 9 (5-6) : 405 - 415
12345