Template-based prediction of protein structure with deep learning

被引:0
|
作者
Haicang Zhang
Yufeng Shen
机构
[1] Columbia University,Department of Systems Biology
[2] Columbia University,Department of Biomedical Informatics
[3] Columbia University,JP Sulzberger Columbia Genome Center
[4] Columbia University,Program in Mathematical Genomics
来源
BMC Genomics | / 21卷
关键词
Protein structure prediction; Protein threading; Deep learning; Deep residual neural network;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Template-based prediction of protein structure with deep learning
    Zhang, Haicang
    Shen, Yufeng
    [J]. BMC GENOMICS, 2020, 21 (Suppl 11)
  • [2] Deep template-based protein structure prediction
    Wu, Fandi
    Xu, Jinbo
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2021, 17 (05)
  • [3] Sequence alignment using machine learning for accurate template-based protein structure prediction
    Makigaki, Shuichiro
    Ishida, Takashi
    [J]. BIOINFORMATICS, 2020, 36 (01) : 104 - 111
  • [4] Sequence Alignment Using Machine Learning for Accurate Template-based Protein Structure Prediction
    Makigaki, Shuichiro
    Ishida, Takashi
    [J]. BIO-PROTOCOL, 2020, 10 (09):
  • [5] Template-based prediction of protein function
    Petrey, Donald
    Chen, T. Scott
    Deng, Lei
    Garzon, Jose Ignacio
    Hwang, Howook
    Lasso, Gorka
    Lee, Hunjoong
    Silkov, Antonina
    Honig, Barry
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2015, 32 : 33 - 38
  • [6] Evaluating template-based and template-free protein-protein complex structure prediction
    Vreven, Thom
    Hwang, Howook
    Pierce, Brian G.
    Weng, Zhiping
    [J]. BRIEFINGS IN BIOINFORMATICS, 2014, 15 (02) : 169 - 176
  • [7] Ensemble of Template-Free and Template-Based Classifiers for Protein Secondary Structure Prediction
    de Oliveira, Gabriel Bianchin
    Pedrini, Helio
    Dias, Zanoni
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (21)
  • [8] Effect of using suboptimal alignments in template-based protein structure prediction
    Chen, Hao
    Kihara, Daisuke
    [J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2011, 79 (01) : 315 - 334
  • [9] Improvement of template-based protein structure prediction by using chimera alignment
    Makigaki, Shuichiro
    Ishida, Takashi
    [J]. PROCEEDINGS OF 2018 8TH INTERNATIONAL CONFERENCE ON BIOSCIENCE, BIOCHEMISTRY AND BIOINFORMATICS (ICBBB 2018), 2018, : 32 - 37
  • [10] Template-based prediction of RNA tertiary structure
    Galvanek, Rastislav
    Hoksza, David
    Panek, Josef
    [J]. 2016 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2016, : 1897 - 1900