Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification

被引：0
|
作者：
Josef Wagner
Paul Coupland
Hilary P. Browne
Trevor D. Lawley
Suzanna C. Francis
Julian Parkhill
机构：
[1] Wellcome Trust Sanger Institute,Tropical Epidemiology Group
[2] London Schools of Hygiene and Tropical Medicine,undefined
来源：
BMC Microbiology | / 16卷
关键词：
PacBio sequencing; MiSeq sequencing; Capillary sequencing; Full-length bacterial 16S rRNA gene sequencing;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification
    Wagner, Josef
    Coupland, Paul
    Browne, Hilary P.
    Lawley, Trevor D.
    Francis, Suzanna C.
    Parkhill, Julian
    [J]. BMC MICROBIOLOGY, 2016, 16 : 1 - 17
  • [2] Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples
    Elena Buetas
    Marta Jordán-López
    Andrés López-Roldán
    Giuseppe D’Auria
    Llucia Martínez-Priego
    Griselda De Marco
    Miguel Carda-Diéguez
    Alex Mira
    [J]. BMC Genomics, 25
  • [3] Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples
    Buetas, Elena
    Jordan-Lopez, Marta
    Lopez-Roldan, Andres
    D'Auria, Giuseppe
    Martinez-Priego, Llucia
    De Marco, Griselda
    Carda-Dieguez, Miguel
    Mira, Alex
    [J]. BMC GENOMICS, 2024, 25 (01)
  • [4] Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing
    Grinevich, Dmitry
    Harden, Lyndy
    Thakur, Siddhartha
    Callahan, Benjamin
    [J]. MSYSTEMS, 2024, 9 (03)
  • [5] Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing
    Daniela Numberger
    Lars Ganzert
    Luca Zoccarato
    Kristin Mühldorfer
    Sascha Sauer
    Hans-Peter Grossart
    Alex D. Greenwood
    [J]. Scientific Reports, 9
  • [6] Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing
    Numberger, Daniela
    Ganzert, Lars
    Zoccarato, Luca
    Muehidorfer, Kristin
    Sauer, Sascha
    Grossart, Hans-Peter
    Greenwood, Alex D.
    [J]. SCIENTIFIC REPORTS, 2019, 9 (1)
  • [7] Optimized bacterial community characterization through full-length 16S rRNA gene sequencing utilizing MinION nanopore technology
    Alessandro Bertolo
    Ezra Valido
    Jivko Stoyanov
    [J]. BMC Microbiology, 24
  • [8] Optimized bacterial community characterization through full-length 16S rRNA gene sequencing utilizing MinION nanopore technology
    Bertolo, Alessandro
    Valido, Ezra
    Stoyanov, Jivko
    [J]. BMC MICROBIOLOGY, 2024, 24 (01)
  • [9] Full-length 16S rRNA gene sequencing reveals spatiotemporal dynamics of bacterial community in a heavily polluted estuary, China
    Ming Hongxia
    Fan Jingfeng
    Liu Jiwen
    Su Jie
    Wan Zhiyi
    Wang Yantao
    Li Dongwei
    Li Mengfei
    Shi Tingting
    Jin Yuan
    Huang Huiling
    Song Jixue
    [J]. ENVIRONMENTAL POLLUTION, 2021, 275
  • [10] The effect of taxonomic classification by full-length 16S rRNA sequencing with a synthetic long-read technology
    Jinuk Jeong
    Kyeongeui Yun
    Seyoung Mun
    Won-Hyong Chung
    Song-Yi Choi
    Young-do Nam
    Mi Young Lim
    Chang Pyo Hong
    ChanHyeok Park
    Yong Ju Ahn
    Kyudong Han
    [J]. Scientific Reports, 11
12345