Fungal taxonomy and sequence-based nomenclature

被引：120

作者：

Lucking, Robert ^{[1
,2
]}

Aime, M. Catherine ^{[2
,3
]}

Robbertse, Barbara ^{[4
]}

Miller, Andrew N. ^{[2
,5
]}

Aoki, Takayuki ^{[2
,6
]}

Ariyawansa, Hiran A. ^{[2
,7
]}

Cardinali, Gianluigi ^{[8
]}

Crous, Pedro W. ^{[2
,9
,10
]}

Druzhinina, Irina S. ^{[2
,11
,12
]}

Geiser, David M. ^{[2
,13
]}

Hawksworth, David L. ^{[2
,14
,15
,16
,17
]}

Hyde, Kevin D. ^{[2
,18
,19
,20
,21
]}

Irinyi, Laszlo ^{[22
,23
,24
,25
]}

Jeewon, Rajesh ^{[26
]}

Johnston, Peter R. ^{[2
,27
]}

Kirk, Paul M. ^{[28
]}

Malosso, Elaine ^{[2
,29
]}

May, Tom W. ^{[2
,30
]}

Meyer, Wieland ^{[22
,23
,24
,25
]}

Nilsson, Henrik R. ^{[31
]}

Opik, Maarja ^{[2
,32
]}

Robert, Vincent ^{[8
]}

Stadler, Marc ^{[2
,33
,34
]}

Thines, Marco ^{[2
,35
]}

Vu, Duong ^{[9
]}

Yurkov, Andrey M. ^{[2
,36
]}

Zhang, Ning ^{[2
,37
]}

Schoch, Conrad L. ^{[2
,4
]}

机构：

[1] Free Univ Berlin, Botan Garten & Bot Museum, Berlin, Germany

[2] Int Commiss Taxon Fungi ICTF, Richmond, Surrey, England

[3] Purdue Univ, Dept Bot & Plant Pathol, W Lafayette, IN 47907 USA

[4] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bldg 10, Bethesda, MD 20892 USA

[5] Univ Illinois, Illinois Nat Hist Survey, Champaign, IL 61820 USA

[6] Natl Agr & Food Res Org, Genet Resources Ctr, Ibaraki, Japan

[7] Natl Taiwan Univ, Coll Bioresources & Agr, Dept Plant Pathol & Microbiol, Taipei, Taiwan

[8] Univ Perugia, Dept Pharmaceut Sci, Perugia, Italy

[9] Westerdijk Fungal Biodivers Inst, Utrecht, Netherlands

[10] Wageningen Univ & Res Ctr WUR, Lab Phytopathol, Wageningen, Netherlands

[11] Nanjing Agr Univ, Fungal Genom Lab FungiG, Nanjing, Jiangsu, Peoples R China

[12] TU Wien, Inst Chem Environm & Biosci Engn ICEBE, Vienna, Austria

[13] Penn State Univ, Dept Plant Pathol & Environm Microbiol, University Pk, PA 16802 USA

[14] Nat Hist Museum, Dept Life Sci, London, England

[15] Royal Bot Gardens, Comparat Plant & Fungal Biol, Richmond, Surrey, England

[16] Univ Southampton, Geog & Environm, Southampton, Hants, England

[17] Jilin Agr Univ, Changchun, Peoples R China

[18] Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China

[19] Mae Fah Luang Univ, Ctr Excellence Fungal Res, Chiang Rai, Thailand

[20] World Agroforestry Ctr, East & Cent Asia, Kunming, Yunnan, Peoples R China

[21] Mushroom Res Fdn, Chiang Rai, Thailand

[22] Westmead Inst Med Res, Ctr Infect Dis & Microbiol, Mol Mycol Res Lab, Westmead, NSW, Australia

[23] Univ Sydney, Fac Med & Hlth, Sydney Med Sch, Westmead Clin Sch, Sydney, NSW, Australia

[24] Univ Sydney, Marie Bashir Inst Infect Dis & Biosecur, Sydney, NSW, Australia

[25] Westmead Hosp Res & Educ Network, Westmead, NSW, Australia

[26] Univ Mauritius, Fac Med & Hlth Sci, Dept Hlth Sci, Reduit, Mauritius

[27] Manaaki Whenua Landcare Res, Auckland, New Zealand

[28] Royal Bot Gardens, Richmond, Surrey, England

[29] Univ Fed Pernambuco, Ctr Biociencias, Dept Micol, Lab Hifomicetos Folhedo, Recife, PE, Brazil

[30] Royal Bot Gardens Victoria, Melbourne, Vic, Australia

[31] Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Gothenburg, Sweden

[32] Univ Tartu, Inst Ecol & Earth Sci, Tartu, Estonia

[33] Helmholtz Ctr Infect Res, Dept Microbial Drugs, Braunschweig, Germany

[34] German Ctr Infect Res DZIF, Partner Site Hannover Braunschweig, Braunschweig, Germany

[35] Goethe Univ, Inst Ecol Evolut & Divers, Frankfurt, Germany

[36] German Collect Microorganisms & Cell Cultures, Leibniz Inst DSMZ, Braunschweig, Germany

[37] Rutgers State Univ, Dept Plant Biol, New Brunswick, NJ USA

来源：

NATURE MICROBIOLOGY | 2021年 / 6卷 / 05期

基金：

美国国家卫生研究院; 美国国家科学基金会;

关键词：

GEN; DIVERSITY; NOV; TREE;

D O I：

10.1038/s41564-021-00888-x

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The identification and proper naming of microfungi, in particular plant, animal and human pathogens, remains challenging. Molecular identification is becoming the default approach for many fungal groups, and environmental metabarcoding is contributing an increasing amount of sequence data documenting fungal diversity on a global scale. This includes lineages represented only by sequence data. At present, these taxa cannot be formally described under the current nomenclature rules. By considering approaches used in bacterial taxonomy, we propose solutions for the nomenclature of taxa known only from sequences to facilitate consistent reporting and communication in the literature and public sequence repositories. This Perspective discusses fungal taxonomy and provides guidance for the naming of fungal taxa known only from sequences.

引用

页码：540 / 548

页数：9

共 50 条

[1] Fungal taxonomy and sequence-based nomenclature
Robert Lücking
M. Catherine Aime
Barbara Robbertse
Andrew N. Miller
Takayuki Aoki
Hiran A. Ariyawansa
Gianluigi Cardinali
Pedro W. Crous
Irina S. Druzhinina
David M. Geiser
David L. Hawksworth
Kevin D. Hyde
Laszlo Irinyi
Rajesh Jeewon
Peter R. Johnston
Paul M. Kirk
Elaine Malosso
Tom W. May
Wieland Meyer
Henrik R. Nilsson
Maarja Öpik
Vincent Robert
Marc Stadler
Marco Thines
Duong Vu
Andrey M. Yurkov
Ning Zhang
Conrad L. Schoch
[J]. Nature Microbiology, 2021, 6 : 540 - 548
[2] Author Correction: Fungal taxonomy and sequence-based nomenclature
Robert Lücking
M. Catherine Aime
Barbara Robbertse
Andrew N. Miller
Takayuki Aoki
Hiran A. Ariyawansa
Gianluigi Cardinali
Pedro W. Crous
Irina S. Druzhinina
David M. Geiser
David L. Hawksworth
Kevin D. Hyde
Laszlo Irinyi
Rajesh Jeewon
Peter R. Johnston
Paul M. Kirk
Elaine Malosso
Tom W. May
Wieland Meyer
Henrik R. Nilsson
Maarja Öpik
Vincent Robert
Marc Stadler
Marco Thines
Duong Vu
Andrey M. Yurkov
Ning Zhang
Conrad L. Schoch
[J]. Nature Microbiology, 2021, 6 (7) : 971 - 971
[3] Fungal taxonomy and sequence-based nomenclature (vol 6, pg 540, 2021)
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Druzhinina, Irina S.
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Meyer, Wieland
Nilsson, Henrik R.
Opik, Maarja
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Stadler, Marc
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