A PARALLEL GEOMETRIC MULTIGRID METHOD FOR FINITE ELEMENTS ON OCTREE MESHES

被引:52
|
作者
Sampath, Rahul S. [1 ]
Biros, George [2 ,3 ,4 ]
机构
[1] Georgia Inst Technol, Sch Computat Sci & Engn, Atlanta, GA 30332 USA
[2] Georgia Inst Technol, Dept Biomed Engn, Atlanta, GA 30332 USA
[3] Georgia Inst Technol, Sch Computat Sci, Atlanta, GA 30332 USA
[4] Georgia Inst Technol, Div Engn, Atlanta, GA 30332 USA
来源
SIAM JOURNAL ON SCIENTIFIC COMPUTING | 2010年 / 32卷 / 03期
基金
美国国家科学基金会;
关键词
geometric multigrid; meshing; finite element method; linear octrees; adaptive meshes; matrix-free methods; iterative solvers; parallel algorithms; tree codes; MULTILEVEL METHODS; EQUATIONS; SOLVER; CONVERGENCE; CONSTRUCTION;
D O I
10.1137/090747774
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
In this article, we present a parallel geometric multigrid algorithm for solving variable-coefficient elliptic partial differential equations on the unit box (with Dirichlet or Neumann boundary conditions) using highly nonuniform, octree-based, conforming finite element discretizations. Our octrees are 2:1 balanced, that is, we allow no more than one octree-level difference between octants that share a face, edge, or vertex. We describe a parallel algorithm whose input is an arbitrary 2:1 balanced fine-grid octree and whose output is a set of coarser 2:1 balanced octrees that are used in the multigrid scheme. Also, we derive matrix-free schemes for the discretized finite element operators and the intergrid transfer operations. The overall scheme is second-order accurate for sufficiently smooth right-hand sides and material properties; its complexity for nearly uniform trees is O((N)(np) log (N)(np)) + O(n(p) log n(p)), where N is the number of octree nodes and np is the number of processors. Our implementation uses the Message Passing Interface standard. We present numerical experiments for the Laplace and Navier (linear elasticity) operators that demonstrate the scalability of our method. Our largest run was a highly nonuniform, 8-billion-unknown, elasticity calculation using 32,000 processors on the Teragrid system, "Ranger," at the Texas Advanced Computing Center. Our implementation is publically available in the Dendro library, which is built on top of the PETSc library from Argonne National Laboratory.
引用
收藏
页码:1361 / 1392
页数:32
相关论文
共 50 条
  • [1] A massively parallel multigrid method for finite elements
    Bergen, Benjamin
    Gradl, Tobias
    Ruede, Ulrich
    Huelsemann, Frank
    COMPUTING IN SCIENCE & ENGINEERING, 2006, 8 (06) : 56 - 62
  • [2] Parallel Finite Cell Method with Adaptive Geometric Multigrid
    Saberi, S.
    Vogel, A.
    Meschke, G.
    EURO-PAR 2020: PARALLEL PROCESSING, 2020, 12247 : 578 - 593
  • [3] Multigrid techniques for finite elements on locally refined meshes
    Becker, R
    Braack, M
    NUMERICAL LINEAR ALGEBRA WITH APPLICATIONS, 2000, 7 (06) : 363 - 379
  • [4] A geometric data structure for parallel finite elements and the application to multigrid methods with block smoothing
    Wieners, Christian
    COMPUTING AND VISUALIZATION IN SCIENCE, 2010, 13 (04) : 161 - 175
  • [5] On the use of the extended finite element method with quadtree/octree meshes
    Legrain, G.
    Allais, R.
    Cartraud, P.
    INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING, 2011, 86 (06) : 717 - 743
  • [6] An asynchronous parallel explicit solver based on scaled boundary finite element method using octree meshes
    Zhang, Junqi
    Zhao, Mi
    Eisentraeger, Sascha
    Du, Xiuli
    Song, Chongmin
    COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, 2022, 401
  • [7] Parallel multigrid method for finite element simulations of complex flow problems on locally refined meshes
    Kimmritz, Madlen
    Richter, Thomas
    NUMERICAL LINEAR ALGEBRA WITH APPLICATIONS, 2011, 18 (04) : 615 - 636
  • [8] Optimization of Serial and Parallel Communications for Parallel Geometric Multigrid Method
    Nakajima, Kengo
    2014 20TH IEEE INTERNATIONAL CONFERENCE ON PARALLEL AND DISTRIBUTED SYSTEMS (ICPADS), 2014, : 25 - 32
  • [9] Parallel geometric multigrid
    Martynenko, Sergey I.
    Volokhov, Vadim M.
    Yanovskiy, Leonid S.
    INTERNATIONAL JOURNAL OF COMPUTING SCIENCE AND MATHEMATICS, 2016, 7 (04) : 293 - 300
  • [10] Geometric multigrid method for solving Poisson's equation on octree grids with irregular boundaries
    Teunissen, Jannis
    Schiavello, Francesca
    COMPUTER PHYSICS COMMUNICATIONS, 2023, 286