European Genome-phenome Archive (EGA) - Granular solutions for the next 10 years

被引：2
|
作者：
Fernandez-Orth, Dietmar [1 ]
Lloret-Villas, Audald [1 ]
Rambla de Argila, Jordi [1 ]
机构：
[1] Ctr Genom Regulat, European Genome Phenome Arch, Barcelona, Spain
来源：
2019 IEEE 32ND INTERNATIONAL SYMPOSIUM ON COMPUTER-BASED MEDICAL SYSTEMS (CBMS) | 2019年
基金：
欧盟地平线“2020”;
关键词：
Human data; controlled access; data federation; personalized medicine; omics data repository;
D O I：
10.1109/CBMS.2019.00011
中图分类号：
TP [自动化技术、计算机技术];
学科分类号：
0812 ;
摘要：
The European Genome-phenome Archive (EGA) is a repository that facilitates access and management for long-term archival of human biomolecular data. The EGA is co-managed by the European Bioinformatics Institute (EBI) and the Centre for Genomic Regulation (CRG). As the omics community awareness of data sharing and reproducibility increases, complex services and granular solutions are needed from the repositories such as EGA. Not only will we introduce the EGA environment but we will also present advanced features designed for a wide range of users. These new tools and technologies include the EGA Beacon (developed within the GA4GH and ELIXIR framework), infrastructures for data access and retrieval, as well as data quality control and visualisation projects.
引用
收藏
页码：4 / 6
页数：3
相关论文
共 11 条
  • [1] The European Genome-phenome Archive in 2021
    Freeberg, Mallory Ann
    Fromont, Lauren A.
    D'Altri, Teresa
    Romero, Anna Foix
    Ciges, Jorge Izquierdo
    Jene, Aina
    Kerry, Giselle
    Moldes, Mauricio
    Ariosa, Roberto
    Bahena, Silvia
    Barrowdale, Daniel
    Barbero, Marcos Casado
    Fernandez-Orth, Dietmar
    Garcia-Linares, Carles
    Garcia-Rios, Emilio
    Haziza, Frederic
    Juhasz, Bela
    Llobet, Oscar Martinez
    Milla, Gemma
    Mohan, Anand
    Rueda, Manuel
    Sankar, Aravind
    Shaju, Dona
    Shimpi, Ashutosh
    Singh, Babita
    Thomas, Coline
    de la Torre, Sabela
    Uyan, Umuthan
    Vasallo, Claudia
    Flicek, Paul
    Guigo, Roderic
    Navarro, Arcadi
    Parkinson, Helen
    Keane, Thomas
    Rambla, Jordi
    [J]. NUCLEIC ACIDS RESEARCH, 2022, 50 (D1) : D980 - D987
  • [2] The European Genome-phenome Archive of human data consented for biomedical research
    Lappalainen, Ilkka
    Almeida-King, Jeff
    Kumanduri, Vasudev
    Senf, Alexander
    Spalding, John Dylan
    Ur-Rehman, Saif
    Saunders, Gary
    Kandasamy, Jag
    Caccamo, Mario
    Leinonen, Rasko
    Vaughan, Brendan
    Laurent, Thomas
    Rowland, Francis
    Marin-Garcia, Pablo
    Barker, Jonathan
    Jokinen, Petteri
    Torres, Angel Carreno
    de Argila, Jordi Rambla
    Llobet, Oscar Martinez
    Medina, Ignacio
    Puy, Marc Sitges
    Alberich, Mario
    de la Torre, Sabela
    Navarro, Arcadi
    Paschall, Justin
    Flicek, Paul
    [J]. NATURE GENETICS, 2015, 47 (07) : 692 - 695
  • [3] The European Genome-phenome Archive of human data consented for biomedical research
    Ilkka Lappalainen
    Jeff Almeida-King
    Vasudev Kumanduri
    Alexander Senf
    John Dylan Spalding
    Saif ur-Rehman
    Gary Saunders
    Jag Kandasamy
    Mario Caccamo
    Rasko Leinonen
    Brendan Vaughan
    Thomas Laurent
    Francis Rowland
    Pablo Marin-Garcia
    Jonathan Barker
    Petteri Jokinen
    Angel Carreño Torres
    Jordi Rambla de Argila
    Oscar Martinez Llobet
    Ignacio Medina
    Marc Sitges Puy
    Mario Alberich
    Sabela de la Torre
    Arcadi Navarro
    Justin Paschall
    Paul Flicek
    [J]. Nature Genetics, 2015, 47 : 692 - 695
  • [4] A quality control portal for sequencing data deposited at the European genome-phenome archive
    Fernandez-Orth, Dietmar
    Rueda, Manuel
    Singh, Babita
    Moldes, Mauricio
    Jene, Aina
    Ferri, Marta
    Vasallo, Claudia
    Fromont, Lauren A.
    Navarro, Arcadi
    Rambla, Jordi
    [J]. BRIEFINGS IN BIOINFORMATICS, 2022, 23 (03)
  • [5] EGAsubmitter: A software to automate submission of nucleic acid sequencing data to the European Genome-phenome Archive
    Viviani, Marco
    Montemurro, Marilisa
    Trusolino, Livio
    Bertotti, Andrea
    Urgese, Gianvito
    Grassi, Elena
    [J]. FRONTIERS IN BIOINFORMATICS, 2023, 3
  • [6] The European Genome-phenome Archive in 2021 (vol 50, pg D980, 2022)
    不详
    [J]. NUCLEIC ACIDS RESEARCH, 2023, 51 (06) : 2994 - 2994
  • [7] The German Human Genome-Phenome Archive (GHGA) - A national infrastructure for secure archival and community-driven analysis of omics data
    Pages, Anna Benet
    Mertes, Christian
    [J]. EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 677 - 678
  • [8] Simulated European Genome-phenome Dataset of 1,000,000 Individuals for 1+Million Genomes Initiative
    Hiekkalinna, Tero
    Heikkinen, Vilho
    Perola, Markus
    Terwilliger, Joseph
    [J]. EUROPEAN JOURNAL OF HUMAN GENETICS, 2023, 31 : 645 - 645
  • [9] ARMS CONTROL AND EUROPEAN UNITY - NEXT 10 YEARS
    DEUTSCH, KW
    [J]. BULLETIN OF THE ATOMIC SCIENTISTS, 1967, 23 (05) : 21 - 24
  • [10] European gas supply during the next 10 to 15 years
    MAI Consultants Ltd
    [J]. Pet Rev, 586 (508-511):
12