Conformational flexibility influences structure-function relationships in tyrosyl protein sulfotransferase-2

被引:7
|
作者
Singh, Warispreet [1 ]
Karabencheva-Christova, Tatyana G. [1 ]
Black, Gary W. [1 ]
Sparagano, Olivier [2 ]
Christov, Christo Z. [1 ]
机构
[1] Northumbria Univ, Fac Hlth & Life Sci, Dept Appl Sci, Newcastle Upon Tyne NE1 8ST, Tyne & Wear, England
[2] Coventry Univ, Vice Chancellors Off, Coventry CV1 5FB, W Midlands, England
来源
RSC ADVANCES | 2016年 / 6卷 / 14期
基金
英国工程与自然科学研究理事会;
关键词
CHEMOKINE RECEPTORS; MOLECULAR-DYNAMICS; CRYSTAL-STRUCTURE; HIGH-THROUGHPUT; SULFATION; GROMACS; SIMULATION; PHASE;
D O I
10.1039/c5ra25365a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Tyrosine sulfation is a very important posttranslational modification of proteins. It is catalyzed by tyrosylprotein sulfotransferase and recently became increasingly important for biomedicine and pharmacy. An important insight about structure-activity relationships of human tyrosylprotein sulfotransferase has been received by elucidating the crystal structure, but there is still no understanding about how conformational flexibility and dynamics which are fundamental protein properties influence structure-function relationships of the enzyme. In order to provide this missing but crucially important knowledge we performed a comprehensive atomistic molecular dynamics study which revealed that (i) the conformational flexibility influences sensitively key structural determinants and interactions between the enzyme, the substrate and the cofactor; (ii) a more open conformation adopted by the substrate for binding in TPST 2; (iii) the mutations of key residues related with catalysis and binding change alter the enzyme structure and influence important interactions between the enzyme, the cofactor and the substrate.
引用
收藏
页码:11344 / 11352
页数:9
相关论文
共 50 条
  • [1] Conformational flexibility influences structure-function relationships in nucleic acid N-methyl demethylases
    Waheed, Sodiq O.
    Ramanan, Rajeev
    Chaturvedi, Shobhit S.
    Ainsley, Jon
    Evison, Martin
    Ames, Jennifer M.
    Schofield, Christopher J.
    Christov, Christo Z.
    Karabencheva-Christova, Tatyana G.
    ORGANIC & BIOMOLECULAR CHEMISTRY, 2019, 17 (08) : 2223 - 2231
  • [2] Computational modelling structure-function relationships of tyrosylprotein sulfotransferase
    Christov, Christo
    Karabencheva-Christova, Tatyana
    Singh, Warispreet
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 252
  • [3] Structure-Function Relationships in Protein Complexes
    Kundrotas, Petras
    Belkin, Saveliy
    Vakser, Ilya
    BIOPHYSICAL JOURNAL, 2018, 114 (03) : 46A - 46A
  • [4] Structure-function relationships in protein homorepeats
    Elena-Real, Carlos A.
    Mier, Pablo
    Sibille, Nathalie
    Andrade-Navarro, Miguel A.
    Bernado, Pau
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2023, 83
  • [6] Protein tyrosine phosphatases: structure-function relationships
    Tabernero, Lydia
    Aricescu, A. Radu
    Jones, E. Yvonne
    Szedlacsek, Stefan E.
    FEBS JOURNAL, 2008, 275 (05) : 867 - 882
  • [7] Developing protein structure-function relationships in silico
    Nasir-ud-Din
    Ahmad, Ishtiaq
    Shakoori, A. R.
    Hoessli, Daniel C.
    CURRENT ORGANIC CHEMISTRY, 2008, 12 (11) : 957 - 971
  • [8] Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction
    Teramoto, Takamasa
    Fujikawa, Yukari
    Kawaguchi, Yoshirou
    Kurogi, Katsuhisa
    Soejima, Masayuki
    Adachi, Rumi
    Nakanishi, Yuichi
    Mishiro-Sato, Emi
    Liu, Ming-Cheh
    Sakakibara, Yoichi
    Suiko, Masahito
    Kimura, Makoto
    Kakuta, Yoshimitsu
    NATURE COMMUNICATIONS, 2013, 4
  • [9] Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction
    Takamasa Teramoto
    Yukari Fujikawa
    Yoshirou Kawaguchi
    Katsuhisa Kurogi
    Masayuki Soejima
    Rumi Adachi
    Yuichi Nakanishi
    Emi Mishiro-Sato
    Ming-Cheh Liu
    Yoichi Sakakibara
    Masahito Suiko
    Makoto Kimura
    Yoshimitsu Kakuta
    Nature Communications, 4
  • [10] Structure-function relationships of the polypyrimidine tract binding protein
    Auweter, S. D.
    Allain, F. H. -T.
    CELLULAR AND MOLECULAR LIFE SCIENCES, 2008, 65 (04) : 516 - 527