Epigenetic loss of RNA-methyltransferase NSUN5 in glioma targets ribosomes to drive a stress adaptive translational program

被引:137
|
作者
Janin, Maxime [1 ]
Ortiz-Barahona, Vanessa [1 ]
de Moura, Manuel Castro [1 ]
Martinez-Cardus, Anna [1 ]
Llinas-Arias, Pere [1 ]
Soler, Marta [1 ]
Nachmani, Daphna [2 ]
Pelletier, Joffrey [3 ]
Schumann, Ulrike [4 ]
Calleja-Cervantes, Maria E. [1 ]
Moran, Sebastian [1 ]
Guil, Sonia [1 ]
Bueno-Costa, Alberto [1 ]
Pineyro, David [1 ]
Perez-Salvia, Montserrat [1 ]
Rossello-Tortella, Margalida [1 ]
Pique, Laia [1 ]
Bech-Serra, Joan J. [5 ]
De la Torre, Carolina [5 ]
Vidal, August [6 ,7 ]
Martinez-Iniesta, Maria [8 ]
Martin-Tejera, Juan F. [8 ]
Villanueva, Alberto [8 ]
Arias, Alexandra [9 ]
Cuartas, Isabel [9 ]
Aransay, Ana M. [10 ]
La Madrid, Andres Morales [11 ,12 ]
Carcaboso, Angel M. [13 ]
Santa-Maria, Vicente [11 ,12 ]
Mora, Jaume [11 ]
Fernandez, Agustin F. [14 ]
Fraga, Mario F. [15 ]
Aldecoa, Iban [16 ]
Pedrosa, Leire [17 ,18 ]
Graus, Francesc [19 ]
Vidal, Noemi [6 ]
Martinez-Soler, Fina [20 ]
Tortosa, Avelina [20 ]
Carrato, Cristina [21 ]
Balana, Carme [22 ]
Boudreau, Matthew W. [23 ]
Hergenrother, Paul J. [23 ]
Koetter, Peter [24 ]
Entian, Karl-Dieter [24 ]
Hench, Juergen [25 ]
Frank, Stephan [25 ]
Mansouri, Sheila [26 ]
Zadeh, Gelareh [26 ]
Dans, Pablo D. [27 ]
Orozco, Modesto [27 ,28 ]
机构
[1] Bellvitge Biomed Res Inst IDIBELL, Canc Epigenet & Biol Program PEBC, Barcelona, Catalonia, Spain
[2] Harvard Med Sch, Beth Israel Deaconess Med Ctr, Canc Res Inst, Dept Med & Pathol, Boston, MA 02115 USA
[3] Bellvitge Biomed Res Inst IDIBELL, Metab & Canc Grp, Mol Mech & Expt Therapy Oncol Program, Barcelona, Catalonia, Spain
[4] Australian Natl Univ, John Curtin Sch Med Res, Dept Genome Sci, EMBL Australia Collaborating Grp, Garran Rd, Acton, ACT 2601, Australia
[5] Bellvitge Biomed Res Inst IDIBELL, Prote Unit, Barcelona, Catalonia, Spain
[6] Hosp Univ Bellvitge, Dept Pathol, IDIBELL, Barcelona, Catalonia, Spain
[7] Ctr Invest Biomed Red Canc CIBERONC, Madrid, Spain
[8] Bellvitge Inst Biomed Res IDIBELL, Catalan Inst Oncol ICO, Oncobell Program, Program Canc Therapeut Resistance ProCURE, Barcelona, Catalonia, Spain
[9] Univ Autonoma Barcelona, Vall dHebron Univ Hosp, Vall dHebron Inst Oncol VHIO, Barcelona, Catalonia, Spain
[10] CIC BioGUNE, Ctr Invest Bimed Red Enfermedades Hepat & Digest, 801A Bizkaia Technol Pk, Derio 48160, Spain
[11] Hosp St Joan de Deu, Dept Pediat Hematol & Oncol, Barcelona, Catalonia, Spain
[12] Hosp St Joan de Deu, Dept Pediat Hematol & Oncol, Pediat Neurooncol Unit, Barcelona, Catalonia, Spain
[13] Fundacio St Joan de Deu, Preclin Therapeut & Drug Delivery Res Program, Barcelona, Catalonia, Spain
[14] Inst Invest Sanitaria Principado Asturias ISPA FI, Inst Oncol Asturias IUOPA, Oviedo 33011, Spain
[15] Univ Oviedo Principado Asturias, Nanomat & Nanotechnol Res Ctr CINN CSIC, Oviedo, Spain
[16] August Pi & Sunyer Biomed Res Inst IDIBAPS, CDB, Hosp Clin Barcelona, Pathol Brain Bank, Barcelona, Catalonia, Spain
[17] IDIBAPS, Glioma & Neural Stem Cell Grp, Barcelona, Catalonia, Spain
[18] IDIBAPS, Translat Genom & Targeted Therapeut Solid Tumors, Barcelona, Catalonia, Spain
[19] IDIBAPS, Clin & Expt Neuroimmunol, Barcelona, Catalonia, Spain
[20] Univ Barcelona, Fac Med & Hlth Sci Bellvitge, IDIBELL, Barcelona, Catalonia, Spain
[21] Univ Autonoma Barcelona, Hosp Univ Germans Trias & Pujol, Dept Pathol, Badalona, Catalonia, Spain
[22] Hosp Badalona Germans Trias & Pujol, Catalan Inst Oncol, Badalona 08916, Catalonia, Spain
[23] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[24] Goethe Univ, Inst Mol Biosci, Frankfurt, Germany
[25] Univ Hosp Basel, Inst Med Genet & Pathol, Div Neuropathol, CH-4031 Basel, Switzerland
[26] Univ Toronto, Toronto Western Hosp, Div Neurosurg, Toronto, ON, Canada
[27] Barcelona Inst Sci & Technol, Inst Res Biomed IRB Barcelona, Joint IRB BSC Program Computat Biol, Barcelona 08028, Catalonia, Spain
[28] Univ Barcelona, Dept Biochem & Biomed, E-08028 Barcelona, Spain
[29] Univ Barcelona, Sch Med & Hlth Sci, Physiol Sci Dept, Barcelona, Catalonia, Spain
[30] Univ Cincinnati, Dept Internal Med, Div Hematol Oncol, Med Sch, Cincinnati, OH 45267 USA
[31] CIC BioGUNE, 801A Bizkaia Technol Pk, Derio 48160, Spain
[32] Univ Salamanca, CSIC, Ctr Invest Canc, Mol Mech Program, Salamanca 37007, Spain
[33] Univ Salamanca, CSIC, Inst Biol Mol & Celular Canc, Salamanca 37007, Spain
[34] ICREA, Barcelona, Catalonia, Spain
[35] Victor Chang Cardiac Res Inst, Sydney, NSW 2010, Australia
[36] Josep Carreras Leukaemia Res Inst IJC, Ctra Can Ruti,Cami Escoles S-N, Barcelona 08916, Catalonia, Spain
关键词
Glioma; Epitranscriptomics; RNA methylation; Clinical outcome; DYSKERATOSIS-CONGENITA; CANCER; GENE; METHYLATION; MUTATIONS; BINDING; GENOME; YEAST; MGMT;
D O I
10.1007/s00401-019-02062-4
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Tumors have aberrant proteomes that often do not match their corresponding transcriptome profiles. One possible cause of this discrepancy is the existence of aberrant RNA modification landscapes in the so-called epitranscriptome. Here, we report that human glioma cells undergo DNA methylation-associated epigenetic silencing of NSUN5, a candidate RNA methyltransferase for 5-methylcytosine. In this setting, NSUN5 exhibits tumor-suppressor characteristics in vivo glioma models. We also found that NSUN5 loss generates an unmethylated status at the C3782 position of 28S rRNA that drives an overall depletion of protein synthesis, and leads to the emergence of an adaptive translational program for survival under conditions of cellular stress. Interestingly, NSUN5 epigenetic inactivation also renders these gliomas sensitive to bioactivatable substrates of the stress-related enzyme NQO1. Most importantly, NSUN5 epigenetic inactivation is a hallmark of glioma patients with long-term survival for this otherwise devastating disease.
引用
收藏
页码:1053 / 1074
页数:22
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共 4 条
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