Parallelized sampling of the Gibbs ensemble

被引:3
|
作者
Strnad, M [1 ]
Nezbeda, I
机构
[1] Acad Sci Czech Republ, Inst Chem Proc Fundamentals, E Hala Lab Thermodynam, CR-16502 Prague 6, Czech Republic
[2] JE Purkyne Univ, Dept Phys, Usti N Lab, Czech Republic
关键词
D O I
10.1080/00268970009483392
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An expression for the probability distribution of NVT-like sub-ensembles constituting the Gibbs ensemble is derived. Knowledge of this distribution makes it possible to carry out the simulation without the explicit exchange of real particles between the simulation boxes and to evaluate directly any Gibbs ensemble average from a series of independent simultaneous simulations (Monte Carlo or molecular dynamics) performed on a set of NVT-like sub-ensembles with the fixed distribution of particles. An implementation of the method, which is tailored mainly for complex systems, is exemplified for the square-well fluid, and its efficiency and results are compared with those obtained from the conventional Gibbs ensemble simulations.
引用
收藏
页码:1887 / 1894
页数:8
相关论文
共 50 条
  • [1] Parallelized Nested Sampling
    Henderson, R. Wesley
    Goggans, Paul M.
    BAYESIAN INFERENCE AND MAXIMUM ENTROPY METHODS IN SCIENCE AND ENGINEERING, MAXENT 2013, 2014, 1636 : 100 - 105
  • [2] GIBBS ENSEMBLE AND BIOLOGICAL ENSEMBLE
    KERNER, EH
    ANNALS OF THE NEW YORK ACADEMY OF SCIENCES, 1962, 96 (04) : 975 - +
  • [3] Gibbs sampling
    Gelfand, AE
    JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2000, 95 (452) : 1300 - 1304
  • [4] An extended Gibbs ensemble
    Strnad, M
    Nezbeda, I
    MOLECULAR SIMULATION, 1999, 22 (03) : 183 - 198
  • [5] Replica exchange and expanded ensemble simulations as Gibbs sampling: Simple improvements for enhanced mixing
    Chodera, John D.
    Shirts, Michael R.
    JOURNAL OF CHEMICAL PHYSICS, 2011, 135 (19):
  • [6] Accelerating replica exchange and generalized ensemble simulations through Gibbs sampling in state space
    Shirts, Michael
    Chodera, John
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, 241
  • [7] APPLICATION OF EXCLUDED VOLUME MAP SAMPLING TO PHASE-EQUILIBRIUM CALCULATIONS IN THE GIBBS ENSEMBLE
    STAPLETON, MR
    PANAGIOTOPOULOS, AZ
    JOURNAL OF CHEMICAL PHYSICS, 1990, 92 (02): : 1285 - 1293
  • [8] ADAPTIVE REJECTION SAMPLING FOR GIBBS SAMPLING
    GILKS, WR
    WILD, P
    JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS, 1992, 41 (02) : 337 - 348
  • [9] On particle Gibbs sampling
    Chopin, Nicolas
    Singh, Sumeetpal S.
    BERNOULLI, 2015, 21 (03) : 1855 - 1883
  • [10] Herded Gibbs Sampling
    Chen, Yutian
    Bornn, Luke
    de Freitas, Nando
    Eskelin, Mareija
    Fang, Jing
    Welling, Max
    JOURNAL OF MACHINE LEARNING RESEARCH, 2016, 17