Hub Promiscuity in Protein-Protein Interaction Networks

被引:119
|
作者
Patil, Ashwini [2 ]
Kinoshita, Kengo [3 ,4 ]
Nakamura, Haruki [1 ]
机构
[1] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
[2] Univ Tokyo, Inst Med Sci, Ctr Human Genome, Minato Ku, Tokyo 1088639, Japan
[3] Tohoku Univ, Grad Sch Informat Sci, Aoba Ku, Sendai, Miyagi 9820036, Japan
[4] Japan Sci & Technol Corp, Bioinformat Res & Dev, Kawaguchi, Saitama 3320012, Japan
基金
日本学术振兴会;
关键词
protein-protein interactions; interaction networks; hubs; promiscuous binding; INTRINSICALLY DISORDERED PROTEINS; UNSTRUCTURED PROTEINS; HOT-SPOTS; BINDING; IDENTIFICATION; MAP; PREDICTION; COMPLEXES; UBIQUITIN; RESIDUES;
D O I
10.3390/ijms11041930
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Hubs are proteins with a large number of interactions in a protein-protein interaction network. They are the principal agents in the interaction network and affect its function and stability. Their specific recognition of many different protein partners is of great interest from the structural viewpoint. Over the last few years, the structural properties of hubs have been extensively studied. We review the currently known features that are particular to hubs, possibly affecting their binding ability. Specifically, we look at the levels of intrinsic disorder, surface charge and domain distribution in hubs, as compared to non-hubs, along with differences in their functional domains.
引用
收藏
页码:1930 / 1943
页数:14
相关论文
共 50 条
  • [1] Hub Promiscuity in Protein-Protein Interaction Networks (vol 11, pg 1930, 2010)
    Patil, Ashwini
    Kinoshita, Kengo
    Nakamura, Haruki
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2010, 11 (08): : 2791 - 2791
  • [2] Essentiality of Hub Proteins in Protein-protein Interaction Networks of Yeast
    Ryu, Jea Woon
    Lee, Yoon Kyeong
    Park, Byeol Na
    Kim, Hak Yong
    Kang, Tae Ho
    Yeo, Myeong Ho
    Yoo, Jae Soo
    Chung, Jean S.
    [J]. JOURNAL OF THE KOREAN PHYSICAL SOCIETY, 2010, 56 (05) : 1527 - 1531
  • [3] A hub-protein based visualization of large protein-protein interaction networks
    Bang, SunLee
    Choi, JaeHun
    Park, JongMin
    Park, Soo-Jun
    [J]. 2007 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-16, 2007, : 1217 - +
  • [4] Promiscuity and protein-protein interaction in dynamics in PDZ domains
    Ozkan, S. Banu
    Gerek, Z. Nevin
    Keskin, Ozlem
    [J]. BIOPHYSICAL JOURNAL, 2007, : 203A - 203A
  • [5] Temporal-Spatial Analysis of the Essentiality of Hub Proteins in Protein-Protein Interaction Networks
    Meng, Xiangmao
    Li, Wenkai
    Xiang, Ju
    Bedru, Hayat Dino
    Wang, Wenkang
    Wu, Fang-Xiang
    Li, Min
    [J]. IEEE TRANSACTIONS ON NETWORK SCIENCE AND ENGINEERING, 2022, 9 (05): : 3504 - 3514
  • [6] Protein-protein interaction networks: how can a hub protein bind so many different partners?
    Tsai, Chung-Jung
    Ma, Buyong
    Nussinov, Ruth
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 2009, 34 (12) : 594 - 600
  • [7] On the structure of protein-protein interaction networks
    Thomas, A
    Cannings, R
    Monk, NAM
    Cannings, C
    [J]. BIOCHEMICAL SOCIETY TRANSACTIONS, 2003, 31 : 1491 - 1496
  • [8] Analyzing Protein-Protein Interaction Networks
    Koh, Gavin C. K. W.
    Porras, Pablo
    Aranda, Bruno
    Hermjakob, Henning
    Orchard, Sandra E.
    [J]. JOURNAL OF PROTEOME RESEARCH, 2012, 11 (04) : 2014 - 2031
  • [9] The fragility of protein-protein interaction networks
    Schneider, C. M.
    Andrade, R. F. S.
    Shinbrot, T.
    Herrmann, H. J.
    [J]. EPL, 2011, 95 (01)
  • [10] Querying Protein-Protein Interaction Networks
    Blin, Guillaume
    Sikora, Florian
    Vialette, Stephane
    [J]. BIOINFORMATICS RESEARCH AND APPLICATIONS: 5TH INTERNATIONAL SYMPOSIUM, ISBRA 2009, 2009, 5542 : 52 - 62