A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort

被引:3
|
作者
Ulgen, Ayse [1 ]
Cetin, Sirin [2 ]
Cetin, Meryem [3 ]
Sivgin, Hakan [4 ]
Li, Wentian [5 ]
机构
[1] Girne Amer Univ, Fac Med, Dept Biostat, Karmi, Cyprus
[2] Tokat Gaziosmanpasa Univ, Fac Med, Dept Biostat, Tokat, Turkey
[3] Amasya Univ, Fac Med, Dept Med Microbiol, Amasya, Turkey
[4] Tokat Gaziosmanpasa Univ, Fac Med, Dept Internal Med, Tokat, Turkey
[5] Northwell Hlth, Robert S Boas Ctr Genom & Human Genet, Feinstein Inst Med Res, Manhasset, NY USA
关键词
COVID-19; Survival analysis; Competing risks; Composite ranking; CORONAVIRUS DISEASE 2019; PROPORTIONAL HAZARDS MODEL; CLINICAL CHARACTERISTICS; SEVERITY; MORTALITY; LYMPHOPENIA; PREDICTION; INCREASES; PROGNOSIS; ADMISSION;
D O I
10.1016/j.compbiolchem.2022.107681
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Having a complete and reliable list of risk factors from routine laboratory blood test for COVID-19 disease severity and mortality is important for patient care and hospital management. It is common to use meta-analysis to combine analysis results from different studies to make it more reproducible. In this paper, we propose to run multiple analyses on the same set of data to produce a more robust list of risk factors. With our time-to-event survival data, the standard survival analysis were extended in three directions. The first is to extend from tests and corresponding p-values to machine learning and their prediction performance. The second is to extend from single-variable to multiple-variable analysis. The third is to expand from analyzing time-to-decease data with death as the event of interest to analyzing time-to-hospital-release data to treat early recovery as a meaningful event as well. Our extension of the type of analyses leads to ten ranking lists. We conclude that 20 out of 30 factors are deemed to be reliably associated to faster-death or faster-recovery. Considering correlation among factors and evidenced by stepwise variable selection in random survival forest, 10 ~ 15 factors seem to be able to achieve the optimal prognosis performance. Our final list of risk factors contain calcium, white blood cell and neutrophils count, urea and creatine, D-dimer, red cell distribution widths, age, ferritin, glucose, lactate dehydrogenase, lymphocyte, basophils, anemia related factors (hemoglobin, hematocrit, mean corpuscular hemoglobin concentration), sodium, potassium, eosinophils, and aspartate aminotransferase.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] A composite ranking of risk factors for COVID-19 time-to-event data from a Turkish cohort
    Ulgen, Ayse
    Cetin, Sirin
    Cetin, Meryem
    Sivgin, Hakan
    Li, Wentian
    [J]. Computational Biology and Chemistry, 2022, 98
  • [2] Time-to-event modeling for hospital length of stay prediction for COVID-19 patients
    Wen, Yuxin
    Rahman, Md Fashiar
    Zhuang, Yan
    Pokojovy, Michael
    Xu, Honglun
    Mccaffrey, Peter
    Vo, Alexander
    Walser, Eric
    Moen, Scott
    Tseng, Tzu-Liang
    [J]. MACHINE LEARNING WITH APPLICATIONS, 2022, 9
  • [3] Time-to-event modeling for hospital length of stay prediction for COVID-19 patients
    Wen, Yuxin
    Rahman, Md Fashiar
    Zhuang, Yan
    Pokojovy, Michael
    Xu, Honglun
    McCaffrey, Peter
    Vo, Alexander
    Walser, Eric
    Moen, Scott
    Tseng, Tzu-Liang
    [J]. Machine Learning with Applications, 2022, 9
  • [4] Analysis of a composite endpoint with longitudinal and time-to-event data
    Tseng, Chi-hong
    Wong, Weng Kee
    [J]. STATISTICS IN MEDICINE, 2011, 30 (09) : 1018 - 1027
  • [5] Coverage of social assistance in Ethiopia during the COVID-19 pandemic: a time-to-event analysis
    Deshpande, Ashwini Sunil
    Mulat, Addis Kassahun
    Mao, Wenhui
    Diab, Mohamed M.
    Ogbuoji, Osondu
    [J]. BMJ GLOBAL HEALTH, 2022, 7 (07):
  • [6] Blood-Type-A is a COVID-19 infection and hospitalization risk in a Turkish cohort
    Cetin, Meryem
    Cetin, Sirin
    Ulgen, Ayse
    Li, Wentian
    [J]. TRANSFUSION CLINIQUE ET BIOLOGIQUE, 2023, 30 (01) : 116 - 122
  • [7] Time-to-event assessment for the discovery of the proper prognostic value of clinical biomarkers optimized for COVID-19
    Ferreira Junior, Jose Raniery
    [J]. CLINICS, 2022, 77
  • [8] Community engagement and dementia risk: time-to-event analyses from a national cohort study
    Fancourt, Daisy
    Steptoe, Andrew
    Cadar, Dorina
    [J]. JOURNAL OF EPIDEMIOLOGY AND COMMUNITY HEALTH, 2020, 74 (01): : 71 - 77
  • [9] Risk factors for death from COVID-19
    Esai Selvan M.
    [J]. Nature Reviews Immunology, 2020, 20 (7) : 407 - 407
  • [10] Novel model prediction time-to-event analysis: data validation and estimation of 200 million cases in the global COVID-19 epidemic
    Rezania, Ali
    Ghorbani, Elaheh
    Hassanian-Moghaddam, Davood
    Faeghi, Farnaz
    Hassanian-Moghaddam, Hossein
    [J]. BMJ OPEN, 2023, 13 (01):