COVID-19 Diagnosis: A Comprehensive Review of the RT-qPCR Method for Detection of SARS-CoV-2

被引:39
|
作者
Dutta, Debashis [1 ]
Naiyer, Sarah [2 ]
Mansuri, Sabanaz [3 ]
Soni, Neeraj [4 ]
Singh, Vandana [5 ]
Bhat, Khalid Hussain [6 ]
Singh, Nishant [7 ]
Arora, Gunjan [8 ]
Mansuri, M. Shahid [9 ]
机构
[1] Univ Nebraska Med Ctr, Dept Pharmacol & Expt Neurosci, Coll Med, Omaha, NE 68198 USA
[2] Univ Illinois, Dept Microbiol & Immunol, Chicago, IL 60616 USA
[3] IDEAS Dent Coll Gwalior, Gwalior 474020, Madhya Pradesh, India
[4] Univ Michigan, Dept Cell & Dev Biol, Ann Arbor, MI 48109 USA
[5] Univ Nebraska Med Ctr, Dept Pathol & Microbiol, Coll Med, Omaha, NE 68198 USA
[6] SKUAST Kashmir, Div Basic Sci & Human, Fac Agr, Wadura Sopore 193201, India
[7] Cell & Gene Therapy Absorpt Syst, Exton, PA 19335 USA
[8] Yale Univ, Infect Dis Sect, Sch Med, New Haven, CT 06520 USA
[9] Yale Univ, Mol Biophys & Biochem, New Haven, CT 06511 USA
关键词
SARS-CoV-2; COVID-19; pandemic; RT-qPCR; cDNA; CORONAVIRUS; PCR; PATIENT; VARIANT; IDENTIFICATION; AMPLIFICATION; PATHOGENESIS; PNEUMONIA; EVOLUTION; INFECTION;
D O I
10.3390/diagnostics12061503
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
The world is grappling with the coronavirus disease 2019 (COVID-19) pandemic, the causative agent of which is severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). COVID-19 symptoms are similar to the common cold, including fever, sore throat, cough, muscle and chest pain, brain fog, dyspnoea, anosmia, ageusia, and headache. The manifestation of the disease can vary from being asymptomatic to severe life-threatening conditions warranting hospitalization and ventilation support. Furthermore, the emergence of mutecated variants of concern (VOCs) is paramount to the devastating effect of the pandemic. This highly contagious virus and its emergent variants challenge the available advanced viral diagnostic methods for high-accuracy testing with faster result yields. This review is to shed light on the natural history, pathology, molecular biology, and efficient diagnostic methods of COVID-19, detecting SARS-CoV-2 in collected samples. We reviewed the gold standard RT-qPCR method for COVID-19 diagnosis to confer a better understanding and application to combat the COVID-19 pandemic. This comprehensive review may further develop awareness about the management of the COVID-19 pandemic.
引用
收藏
页数:18
相关论文
共 50 条
  • [1] SARS-CoV-2 detection by RT-qPCR using saliva in outpatients tested for COVID-19
    Cecilia, Perret P.
    Abarca, Katia
    Solari, Sandra
    Aguilera, Pablo
    Garcia-Huidobro, Diego
    Olivares, Felipe
    Palma, Carlos
    Contreras, Ana Maria
    Martinez-Valdebenito, Constanza
    Ferres, Marcela
    REVISTA CHILENA DE INFECTOLOGIA, 2022, 39 (04): : 372 - 381
  • [2] Detection of SARS-CoV-2 RNA by multiplex RT-qPCR
    Kudo, Eriko
    Israelow, Benjamin
    Vogels, Chantal B. F.
    Lu, Peiwen
    Wyllie, Anne L.
    Tokuyama, Maria
    Venkataraman, Arvind
    Brackney, Doug E.
    Ott, Isabel M.
    Petrone, Mary E.
    Earnest, Rebecca
    Lapidus, Sarah
    Muenker, M. Catherine
    Moore, Adam J.
    Casanovas-Massana, Arnau
    Omer, Saad B.
    Dela Cruz, Charles S.
    Farhadian, Shelli F.
    Ko, Albert I.
    Grubaugh, Nathan D.
    Iwasaki, Akiko
    PLOS BIOLOGY, 2020, 18 (10)
  • [3] A simple RNA preparation method for SARS-CoV-2 detection by RT-qPCR
    Aniela Wozniak
    Ariel Cerda
    Catalina Ibarra-Henríquez
    Valentina Sebastian
    Grace Armijo
    Liliana Lamig
    Carolina Miranda
    Marcela Lagos
    Sandra Solari
    Ana María Guzmán
    Teresa Quiroga
    Susan Hitschfeld
    Eleodoro Riveras
    Marcela Ferrés
    Rodrigo A. Gutiérrez
    Patricia García
    Scientific Reports, 10
  • [4] A simple RNA preparation method for SARS-CoV-2 detection by RT-qPCR
    Wozniak, Aniela
    Cerda, Ariel
    Ibarra-Henriquez, Catalina
    Sebastian, Valentina
    Armijo, Grace
    Lamig, Liliana
    Miranda, Carolina
    Lagos, Marcela
    Solari, Sandra
    Maria Guzman, Ana
    Quiroga, Teresa
    Hitschfeld, Susan
    Riveras, Eleodoro
    Ferres, Marcela
    Gutierrez, Rodrigo A.
    Garcia, Patricia
    SCIENTIFIC REPORTS, 2020, 10 (01)
  • [5] Combination of RT-qPCR testing and clinical features for diagnosis of COVID-19 facilitates management of SARS-CoV-2 outbreak
    Wang, Yishan
    Kang, Hanyujie
    Liu, Xuefeng
    Tong, Zhaohui
    JOURNAL OF MEDICAL VIROLOGY, 2020, 92 (06) : 538 - 539
  • [6] Rapid SARS-CoV-2 antigen testing compared with RT-qPCR in patients suspected for COVID-19
    Popova, Gorica
    Boskovska, Katerina
    Danevska, Ivana Arnaudova
    EUROPEAN RESPIRATORY JOURNAL, 2021, 58
  • [7] Influence of storage solution, temperature, assay time and concentration on RT-qPCR nucleic acid detection for SARS-CoV-2 detection of SARS-CoV-2 by the RT-qPCR
    Su, Lingxuan
    Lou, Yihan
    Li, Jiaxuan
    Mao, Haiyan
    Li, Jianhua
    Sun, Yi
    Zhou, Biaofeng
    Wu, Guangshang
    Huang, Chen
    Zhang, Yanjun
    Chen, Keda
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2024, 707
  • [8] Sensitivity of different RT-qPCR solutions for SARS-CoV-2 detection
    Alcoba-Florez, Julia
    Gil-Campesino, Helena
    Garcia-Martinez de Artola, Diego
    Gonzalez-Montelongo, Rafaela
    Valenzuela-Fernandez, Agustin
    Ciuffreda, Laura
    Flores, Carlos
    INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 2020, 99 : 190 - 192
  • [9] Overcoming Supply Shortage for SARS-CoV-2 Detection by RT-qPCR
    Barra, Gustavo Barcelos
    Santa Rita, Ticiane Henriques
    Mesquita, Pedro Goes
    Jacomo, Rafael Henriques
    Nery, Lidia Freire Abdalla
    GENES, 2021, 12 (01) : 1 - 10
  • [10] RT-qPCR Testing of SARS-CoV-2: A Primer
    Bustin, Stephen A.
    Nolan, Tania
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (08)