Nanosecond molecular dynamics trajectories for B-DNA oligonucleotides based on the amber 4.1 force field including water and counterions

被引：0

作者：

Young, MA

Ravishanker, G

Beveridge, DL

机构：

[1] WESLEYAN UNIV, DEPT CHEM, MIDDLETOWN, CT 06459 USA

[2] WESLEYAN UNIV, MOLEC BIOPHYS PROGRAM, MIDDLETOWN, CT 06459 USA

来源：

BIOPHYSICAL JOURNAL | 1996年 / 70卷 / 02期

关键词：

D O I：

暂无

中图分类号：

Q6 [生物物理学];

学科分类号：

071011 ;

摘要：

引用

页码：TU203 / TU203

页数：1

共 32 条

[1] Nanosecond molecular dynamics trajectories for a B-DNA oligonucleotide including water and counterions based on the AMBER 4.1 Force Field.
Beveridge, DL
Young, MA
Ravishanker, G
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1997, 213 : 265 - COMP
[2] MOLECULAR-DYNAMICS OF B-DNA INCLUDING WATER AND COUNTERIONS - A 140-PS TRAJECTORY FOR D(CGCGAATTCGCG) BASED ON THE GROMOS FORCE-FIELD
SWAMINATHAN, S
RAVISHANKER, G
BEVERIDGE, DL
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1991, 113 (13) : 5027 - 5040
[3] A MOLECULAR-DYNAMICS SIMULATION OF DOUBLE-HELICAL B-DNA INCLUDING COUNTERIONS AND WATER
SEIBEL, GL
SINGH, UC
KOLLMAN, PA
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (19) : 6537 - 6540
[4] HYDRATION STRUCTURE AND DYNAMICS OF B-DNA AND Z-DNA IN THE PRESENCE OF COUNTERIONS VIA MOLECULAR-DYNAMICS SIMULATIONS
SWAMY, KN
CLEMENTI, E
BIOPOLYMERS, 1987, 26 (11) : 1901 - 1927
[5] A NANOSECOND MOLECULAR-DYNAMICS TRAJECTORY FOR A B-DNA DOUBLE HELIX - EVIDENCE FOR SUBSTATES
MCCONNELL, KJ
NIRMALA, R
YOUNG, MA
RAVISHANKER, G
BEVERIDGE, DL
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (10) : 4461 - 4462
[6] A 5-nanosecond molecular dynamics trajectory for B-DNA: Analysis of structure, motions, and solvation
Young, MA
Ravishanker, G
Beveridge, DL
BIOPHYSICAL JOURNAL, 1997, 73 (05) : 2313 - 2336
[7] Molecular dynamics simulation of B-DNA with explicit counter-ions using the CHARMM force-field
Dinakar, A
Ravishanker, G
Beveridge, DL
BIOPHYSICAL JOURNAL, 1996, 70 (02) : MPOS4 - MPOS4
[8] Molecular dynamics simulations of a DMSO/water mixture using the AMBER force field
Stachura, Slawomir S.
Malajczuk, Chris J.
Mancera, Ricardo L.
JOURNAL OF MOLECULAR MODELING, 2018, 24 (07)
[9] Molecular dynamics simulations of a DMSO/water mixture using the AMBER force field
Slawomir S. Stachura
Chris J. Malajczuk
Ricardo L. Mancera
Journal of Molecular Modeling, 2018, 24
[10] Molecular dynamics simulations of DNA with polarizable force fields: Convergence of an ideal B-DNA structure to the crystallographic structure
Babin, Volodymyr
Baucom, Jason
Darden, Thomas A.
Sagui, Celeste
JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (23): : 11571 - 11581

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