The complete chloroplast genome sequence of Ziziphus incurva

被引:4
|
作者
Wang, Yi [1 ]
Hao, Jiabo [1 ]
Yuan, Xiaolong [1 ]
Lu, Bin [1 ]
机构
[1] Yunnan Acad Forestry, Lab Forest Plant Cultivat & Utilizat, Kunming 650204, Yunnan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期
关键词
Ziziphus incurva; chloroplast; Illumina sequencing; phylogenetic analysis;
D O I
10.1080/23802359.2019.1674706
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The first complete chloroplast genome sequences of Ziziphus incurva were reported in this study. The complete chloroplast genome (cpDNA) sequence of Z. incurva was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 160,920?bp in length, contains a large single-copy region (LSC) of 88,778?bp and a small single-copy region (SSC) of 19,172?bp, which were separated by a pair of inverted repeat (IR) regions of 26,477?bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.8% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.8, and 42.7%, respectively. Further, the phylogenomic analysis showed that Z. incurva clustered together with Z. jujube, Z. mauritiana, and Z. spina-christi.
引用
收藏
页码:3465 / 3466
页数:2
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