The complete chloroplast genome sequences of three Adenophora species and comparative analysis with Campanuloid species (Campanulaceae)

被引:22
|
作者
Cheon, Kyeong-Sik [1 ]
Kim, Kyung-Ah [1 ]
Yoo, Ki-Oug [1 ]
机构
[1] Kangwon Natl Univ, Dept Biol Sci, Chunchon, Gangwon, South Korea
来源
PLOS ONE | 2017年 / 12卷 / 08期
基金
新加坡国家研究基金会;
关键词
TRACHELIUM-CAERULEUM; ENDEMIC GENUS; REARRANGEMENTS; ALIGNMENT;
D O I
10.1371/journal.pone.0183652
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We report the complete chloroplast genomes of three Adenophora species, and analyzed these compared them to five published Campanuloid plastomes. The total genome length of Adenophora divaricata, Adenophora erecta, and Adenophora stricta ranged from 159,759 to 176,331 bp. Among the eight Campanuloid species, many inversions were found to be only in the LSC region. IR contraction was also identified in the plastid genome of Adenophora stricta. Phylogenetic analyses based on 76 protein coding genes showed that Campanuloids are monophyletic, and are composed of two major groups: Campanula s. str. and Rapunculus. When we compared each homologous locus among the four Adenophora species, ten regions showed high nucleotide divergence value (>0.03). Among these, nine loci, excepting ycf3-rpoB, are considered to be useful molecular markers for phylogenetic studies and will be helpful to resolve phylogenetic relationships of Adenophora.
引用
收藏
页数:14
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