TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

被引：244
|
作者：
Bonnet, Eric [1 ,2 ]
He, Ying [1 ,2 ]
Billiau, Kenny [1 ,2 ]
Van de Peer, Yves [1 ,2 ]
机构：
[1] Univ Ghent, Dept Plant Syst Biol, B-9052 Ghent, Belgium
[2] Univ Ghent, Dept Mol Genet, B-9052 Ghent, Belgium
来源：
BIOINFORMATICS | 2010年 / 26卷 / 12期
关键词：
ARABIDOPSIS; SIRNA;
D O I：
10.1093/bioinformatics/btq233
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
We present a new web server called TAPIR, designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA-target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA-target duplex having a large loop, making them undetectable by traditional tools.
引用
收藏
页码：1566 / 1568
页数：3
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