Genetic diversity and population structure analysis in a large collection of white clover (Trifolium repens L.) germplasm worldwide

被引:23
|
作者
Wu, Feifei [1 ]
Ma, Sainan [1 ]
Zhou, Jie [1 ]
Han, Chongyang [1 ]
Hu, Ruchang [1 ]
Yang, Xinying [1 ]
Nie, Gang [1 ]
Zhang, Xinquan [1 ]
机构
[1] Sichuan Agr Univ, Anim Sci & Technol Coll, Dept Grassland Sci, Chengdu, Sichuan, Peoples R China
来源
PEERJ | 2021年 / 9卷
关键词
White clover; SSR; Genetic variation; Population structure; MULTILOCUS GENOTYPE DATA; PERENNIAL RYEGRASS; MARKERS; CULTIVARS; SSR; AFLP; RAPD; TRAITS; DNA; MICROSATELLITES;
D O I
10.7717/peerj.11325
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
White clover is an important temperate legume forage with high nutrition. In the present study, 448 worldwide accessions were evaluated for the genetic variation and polymorphisms using 22 simple sequence repeat (SSR) markers. All the markers were highly informative, a total of 341 scored bands were amplified, out of which 337 (98.83%) were polymorphic. The PIC values ranged from 0.89 to 0.97 with an average of 0.95. For the AMOVA analysis, 98% of the variance was due to differences within the population and the remaining 2% was due to differences among populations. The white clover accessions were divided into different groups or subgroups based on PCoA, UPGMA, and STRUCTURE analyses. The existence of genetic differentiation between the originally natural and introduced areas according to the PCoA analysis of the global white clover accessions. There was a weak correlation between genetic relationships and geographic distribution according to UPGMA and STRUCTURE analyses. The results of the present study will provide the foundation for future breeding programs, genetic improvement, core germplasm collection establishment for white clover.
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页数:17
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