Characterization and phylogenetic analysis of the chloroplast genome of Iris lactea var. chinensis

被引:2
|
作者
Cai, Xiaoran [1 ]
Zhang, Bin [1 ]
Wang, Shuai [2 ]
Cheng, Yueqin [1 ]
Wang, Hongwei [1 ]
机构
[1] Henan Agr Univ, Coll Plant Protect, Zhengzhou 450002, Henan, Peoples R China
[2] Henan Agr Univ, Coll Life Sci, Zhengzhou, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 04期
关键词
Iris lactea var; chinensis; chloroplast genome; phylogenetic analysis; CADMIUM;
D O I
10.1080/23802359.2020.1847611
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Iris lactea var. chinensis is a well-regarded ornamental plant in the genus Iris (family Iridaceae). In this report, we present the complete chloroplast (cp) genome sequence of I. lactea var. chinensis for the first time. The complete cp genome of I. lactea var. chinensis was assembled using high-throughput sequencing, and phylogenetic analysis was undertaken based on a dataset of coding regions. The cp genome of I. lactea var. chinensis measures 152,409 bp in length, with regions having two inverted copies (IR 26,026 bp), and separated by the large single copy (LSC 82,256 bp) and small single copy (SSC 18,101 bp) regions. The cp genome encodes 133 unique genes, including 87 different protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Based on a dataset of 69 chloroplast coding regions, the maximum-likelihood (ML) phylogenetic tree analysis indicated that Iris lactea var. chinensis clusters closely with Iris sanguinea. Thus, the complete chloroplast genome presented in this report may provide valuable genetic information not only for the future exploitation and utilization of this plant resource but also for further research investigating its relationship with other Iris species.
引用
收藏
页码:1490 / 1491
页数:2
相关论文
共 50 条
  • [1] 'Siyu': A New Iris lactea var. chinensis Cultivar
    Gong, Yue
    Ye, Wangbin
    Shi, Gongfa
    Fan, Lijuan
    Wang, Ling
    HORTSCIENCE, 2022, 57 (12) : 1602 - 1603
  • [2] 'Niao Chao': A New Iris lactea var. chinensis Cultivar
    Zhao, Ruiyang
    Yang, Juan
    Liu, Guiling
    Fu, Haijing
    Wang, Ling
    Fan, Lijuan
    HORTSCIENCE, 2023, 58 (01) : 149 - 150
  • [3] Identification of characteristic aroma compounds for spicy in Iris lactea var. chinensis
    Sun, Junming
    Tian, Kexin
    Jing, Lu
    Niu, Yafei
    Lou, Qian
    Chen, Hongwu
    PHYSIOLOGIA PLANTARUM, 2023, 175 (05)
  • [4] De novo characterization of the Iris lactea var. chinensis transcriptome and an analysis of genes under cadmium or lead exposure
    Gu, Chun-Sun
    Liu, Liang-Qin
    Deng, Yan-Ming
    Zhang, Yong-Xia
    Wang, Zhi-Quan
    Yuan, Hai-Yan
    Huang, Su-Zhen
    ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY, 2017, 144 : 507 - 513
  • [5] Immature Seeds of Iris lactea var. chinensis Pall. Cultured in Vitro
    Wang Yao
    Bi Xiaoying
    Zheng Yang
    Meng Tongfei
    THIRD CONFERENCE ON HORTICULTURE SCIENCE AND TECHNOLOGY (CHST 2012), 2012, : 441 - 444
  • [6] NaOH scarification and stratification improve germination of Iris lactea var. chinensis seed
    Sun, YC
    Zhang, YJ
    Wang, K
    Qiu, XJ
    HORTSCIENCE, 2006, 41 (03) : 773 - 774
  • [7] 马蔺(Iris lactea var. chinensis)抗盐生理特性的研究
    许玉凤
    王雷
    王文元
    宋哲
    王丹
    植物研究, 2009, 29 (05) : 549 - 552
  • [8] Two new C-glycosylflavones from the leaves of Iris lactea var. chinensis
    Shen, Wen Juan
    Qin, Min Jian
    Shu, Pan
    Zhang, Chao Feng
    CHINESE CHEMICAL LETTERS, 2008, 19 (07) : 821 - 824
  • [9] Two new C-glycosylflavones from the leaves of Iris lactea var. chinensis
    Wen Juan Shen~(a
    Chinese Chemical Letters, 2008, (07) : 821 - 824
  • [10] Characterization of the complete chloroplast genome of Hordeum vulgare L. var. trifurcatum with phylogenetic analysis
    Ren, Yuanhang
    Xia, Hu
    Lu, Lidan
    Zhao, Gang
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (07): : 1852 - 1854