Allosteric Mechanism of Pyruvate Kinase from Leishmania mexicana Uses a Rock and Lock Model

被引:64
|
作者
Morgan, Hugh P.
McNae, Iain W.
Nowicki, Matthew W.
Hannaert, Veronique [2 ,3 ]
Michels, Paul A. M. [2 ,3 ]
Fothergill-Gilmore, Linda A. [1 ]
Walkinshaw, Malcolm D. [1 ]
机构
[1] Univ Edinburgh, Struct Biochem Grp, Inst Struct & Mol Biol, Edinburgh EH9 3JR, Midlothian, Scotland
[2] Catholic Univ Louvain, Trop Dis Res Unit, Duve Inst, B-1200 Brussels, Belgium
[3] Catholic Univ Louvain, Biochem Lab, B-1200 Brussels, Belgium
基金
英国医学研究理事会; 英国惠康基金; 英国生物技术与生命科学研究理事会;
关键词
SITE-DIRECTED MUTAGENESIS; ESCHERICHIA-COLI; STRUCTURAL BASIS; MOLECULAR-BASIS; PROTEINS; M2; TRANSITIONS; ENZYME;
D O I
10.1074/jbc.M109.079905
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Allosteric regulation provides a rate management system for enzymes involved in many cellular processes. Ligand-controlled regulation is easily recognizable, but the underlying molecular mechanisms have remained elusive. We have obtained the first complete series of allosteric structures, in all possible ligated states, for the tetrameric enzyme, pyruvate kinase, from Leishmania mexicana. The transition between inactive T-state and active R-state is accompanied by a simple symmetrical 6 degrees rigid body rocking motion of the A- and C-domain cores in each of the four subunits. However, formation of the R-state in this way is only part of the mechanism; eight essential salt bridge locks that form across the C-C interface provide tetramer rigidity with a coupled 7-fold increase in rate. The results presented here illustrate how conformational changes coupled with effector binding correlate with loss of flexibility and increase in thermal stability providing a general mechanism for allosteric control.
引用
收藏
页码:12892 / 12898
页数:7
相关论文
共 50 条
  • [1] A Molecular Dynamics Study of Allosteric Transitions in Leishmania mexicana Pyruvate Kinase
    Naithani, Ankita
    Taylor, Paul
    Erman, Burak
    Walkinshaw, Malcolm D.
    [J]. BIOPHYSICAL JOURNAL, 2015, 109 (06) : 1149 - 1156
  • [2] The structure of pyruvate kinase from Leishmania mexicana reveals details of the allosteric transition and unusual effector specificity
    Rigden, DJ
    Phillips, SEV
    Michels, PAM
    Fothergill-Gilmore, LA
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 291 (03) : 615 - 635
  • [3] An improved strategy for the crystallization of Leishmania mexicana pyruvate kinase
    Morgan, Hugh P.
    McNae, Iain W.
    Hsin, Kun-Yi
    Michels, Paul A. M.
    Fothergill-Gilmore, Linda A.
    Walkinshaw, Malcolm D.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2010, 66 : 215 - 218
  • [4] The structure of pyruvate kinase from Leishmania mexicana reveals details of the allosteric transition and unusual effector specificity (vol 291, pg 615, 1999)
    Rigden, DJ
    Phillips, SEV
    Michels, PAM
    Fothergill-Gilmore, LA
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 293 (03) : 745 - 749
  • [5] The mechanism of allosteric activation of yeast pyruvate kinase
    不详
    [J]. FASEB JOURNAL, 1999, 13 (07): : A1587 - A1587
  • [6] Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana
    Jamal, Salma
    Scaria, Vinod
    [J]. BMC BIOINFORMATICS, 2013, 14
  • [7] Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana
    Salma Jamal
    Vinod Scaria
    [J]. BMC Bioinformatics, 14
  • [8] Gluconeogenesis in Leishmania mexicana CONTRIBUTION OF GLYCEROL KINASE, PHOSPHOENOLPYRUVATE CARBOXYKINASE, AND PYRUVATE PHOSPHATE DIKINASE
    Rodriguez-Contreras, Dayana
    Hamilton, Nicklas
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2014, 289 (47) : 32989 - 33000
  • [9] Pyruvate kinase from Plasmodium falciparum: Structural and kinetic insights into the allosteric mechanism
    Zhong, Wenhe
    Li, Kuohan
    Cai, Qixu
    Guo, Jingjing
    Yuan, Meng
    Wong, Yee Hwa
    Walkinshaw, Malcolm D.
    Fothergill-Gilmore, Linda A.
    Michels, Paul A. M.
    Dedon, Peter C.
    Lescar, Julien
    [J]. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2020, 532 (03) : 370 - 376
  • [10] PURIFICATION OF PARTICULATE MALATE-DEHYDROGENASE AND PHOSPHOENOL PYRUVATE CARBOXYKINASE FROM LEISHMANIA-MEXICANA-MEXICANA
    MOTTRAM, JC
    COOMBS, GH
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA, 1985, 827 (03) : 310 - 319