Equilibrium self-assembly of small RNA viruses

被引:43
|
作者
Bruinsma, R. F. [1 ,2 ]
Comas-Garcia, M. [3 ]
Garmann, R. F. [4 ]
Grosberg, A. Y. [5 ,6 ]
机构
[1] Univ Calif Los Angeles, Dept Phys & Astron, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA
[3] NCI, HIV Dynam & Replicat Program, Frederick Natl Lab Canc Res, Frederick, MD 21702 USA
[4] Harvard Univ, Sch Engn & Appl Sci, Cambridge, MA 02138 USA
[5] NYU, Dept Phys, 4 Washington Pl, New York, NY 10003 USA
[6] NYU, Ctr Soft Matter Res, 4 Washington Pl, New York, NY 10003 USA
来源
PHYSICAL REVIEW E | 2016年 / 93卷 / 03期
基金
美国国家科学基金会;
关键词
VIRAL CAPSID PROTEIN; PHASE-DIAGRAM; MOLECULES; STRENGTH; PATHWAY;
D O I
10.1103/PhysRevE.93.032405
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We propose a description for the quasiequilibrium self-assembly of small, single-stranded (ss) RNA viruses whose capsid proteins (CPs) have flexible, positively charged, disordered tails that associate with the negatively charged RNA genome molecules. We describe the assembly of such viruses as the interplay between two coupled phase-transition-like events: the formation of the protein shell (the capsid) by CPs and the condensation of a large ss viral RNA molecule. Electrostatic repulsion between the CPs competes with attractive hydrophobic interactions and attractive interaction between neutralized RNA segments mediated by the tail groups. An assembly diagram is derived in terms of the strength of attractive interactions between CPs and between CPs and the RNA molecules. It is compared with the results of recent studies of viral assembly. We demonstrate that the conventional theory of self-assembly, which does describe the assembly of empty capsids, is in general not applicable to the self-assembly of RNA-encapsidating virions.
引用
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页数:14
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