Best practices for the interpretation and reporting of clinical genome sequencing

被引:0
|
作者
Austin-Tse, Chrissy [1 ]
Jobanputra, Vaidehi [2 ]
Perry, Denise [3 ]
Bick, David [4 ]
Taft, Ryan [3 ]
Venner, Eric [5 ]
Gibbs, Richard [5 ]
Young, Ted [6 ]
Barnett, Sarah
Belmont, John [3 ]
Boczek, Nicole [7 ]
Chowdhury, Shimul [8 ]
Ellsworth, Katarzyna [8 ]
Guha, Saurav
Kulkarni, Shashikant [5 ]
Marcou, Cherisse [7 ]
Meng, Linyan [5 ]
Murdock, David [5 ]
Rehman, Atteeq [2 ]
Spiteri, Elizabeth [9 ]
Thomas-Wilson, Amanda [2 ]
Kearney, Hutton [7 ]
Rehm, Heidi [10 ]
机构
[1] Massachusetts Gen Hosp, Boston, MA 02114 USA
[2] New York Genome Ctr, New York, NY USA
[3] Illumina Inc, San Diego, CA USA
[4] HudsonAlpha Inst Biotechnol, Huntsville, AL USA
[5] Baylor Coll Med, Houston, TX 77030 USA
[6] Hosp Sick Children, Toronto, ON, Canada
[7] Mayo Clin, Rochester, MN USA
[8] Rady Childrens Inst Genom Med, San Diego, CA USA
[9] Stanford Univ, Stanford, CA 94305 USA
[10] Broad Inst MIT & Harvard, Cambridge, MA USA
关键词
D O I
10.1016/j.gim.2022.01.587
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
OP039
引用
收藏
页码:S365 / S366
页数:2
相关论文
共 50 条
  • [1] Best practices for the interpretation and reporting of clinical whole genome sequencing
    Austin-Tse, Christina A.
    Jobanputra, Vaidehi
    Perry, Denise L.
    Bick, David
    Taft, Ryan J.
    Venner, Eric
    Gibbs, Richard A.
    Young, Ted
    Barnett, Sarah
    Belmont, John W.
    Boczek, Nicole
    Chowdhury, Shimul
    Ellsworth, Katarzyna A.
    Guha, Saurav
    Kulkarni, Shashikant
    Marcou, Cherisse
    Meng, Linyan
    Murdock, David R.
    Rehman, Atteeq U.
    Spiteri, Elizabeth
    Thomas-Wilson, Amanda
    Kearney, Hutton M.
    Rehm, Heidi L.
    [J]. NPJ GENOMIC MEDICINE, 2022, 7 (01)
  • [2] Best practices for the interpretation and reporting of clinical whole genome sequencing
    Christina A. Austin-Tse
    Vaidehi Jobanputra
    Denise L. Perry
    David Bick
    Ryan J. Taft
    Eric Venner
    Richard A. Gibbs
    Ted Young
    Sarah Barnett
    John W. Belmont
    Nicole Boczek
    Shimul Chowdhury
    Katarzyna A. Ellsworth
    Saurav Guha
    Shashikant Kulkarni
    Cherisse Marcou
    Linyan Meng
    David R. Murdock
    Atteeq U. Rehman
    Elizabeth Spiteri
    Amanda Thomas-Wilson
    Hutton M. Kearney
    Heidi L. Rehm
    [J]. npj Genomic Medicine, 7
  • [3] An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
    Brownstein, Catherine A.
    Beggs, Alan H.
    Homer, Nils
    Merriman, Barry
    Yu, Timothy W.
    Flannery, Katherine C.
    DeChene, Elizabeth T.
    Towne, Meghan C.
    Savage, Sarah K.
    Price, Emily N.
    Holm, Ingrid A.
    Luquette, Lovelace J.
    Lyon, Elaine
    Majzoub, Joseph
    Neupert, Peter
    McCallie, David, Jr.
    Szolovits, Peter
    Willard, Huntington F.
    Mendelsohn, Nancy J.
    Temme, Renee
    Finkel, Richard S.
    Yum, Sabrina W.
    Medne, Livija
    Sunyaev, Shamil R.
    Adzhubey, Ivan
    Cassa, Christopher A.
    de Bakker, Paul I. W.
    Duzkale, Hatice
    Dworzynski, Piotr
    Fairbrother, William
    Francioli, Laurent
    Funke, Birgit H.
    Giovanni, Monica A.
    Handsaker, Robert E.
    Lage, Kasper
    Lebo, Matthew S.
    Lek, Monkol
    Leshchiner, Ignaty
    MacArthur, Daniel G.
    McLaughlin, Heather M.
    Murray, Michael F.
    Pers, Tune H.
    Polak, Paz P.
    Raychaudhuri, Soumya
    Rehm, Heidi L.
    Soemedi, Rachel
    Stitziel, Nathan O.
    Vestecka, Sara
    Supper, Jochen
    Gugenmus, Claudia
    [J]. GENOME BIOLOGY, 2014, 15 (03):
  • [4] An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
    Catherine A Brownstein
    Alan H Beggs
    Nils Homer
    Barry Merriman
    Timothy W Yu
    Katherine C Flannery
    Elizabeth T DeChene
    Meghan C Towne
    Sarah K Savage
    Emily N Price
    Ingrid A Holm
    Lovelace J Luquette
    Elaine Lyon
    Joseph Majzoub
    Peter Neupert
    David McCallie Jr
    Peter Szolovits
    Huntington F Willard
    Nancy J Mendelsohn
    Renee Temme
    Richard S Finkel
    Sabrina W Yum
    Livija Medne
    Shamil R Sunyaev
    Ivan Adzhubey
    Christopher A Cassa
    Paul IW de Bakker
    Hatice Duzkale
    Piotr Dworzyński
    William Fairbrother
    Laurent Francioli
    Birgit H Funke
    Monica A Giovanni
    Robert E Handsaker
    Kasper Lage
    Matthew S Lebo
    Monkol Lek
    Ignaty Leshchiner
    Daniel G MacArthur
    Heather M McLaughlin
    Michael F Murray
    Tune H Pers
    Paz P Polak
    Soumya Raychaudhuri
    Heidi L Rehm
    Rachel Soemedi
    Nathan O Stitziel
    Sara Vestecka
    Jochen Supper
    Claudia Gugenmus
    [J]. Genome Biology, 15
  • [5] Best practices for variant calling in clinical sequencing
    Koboldt, Daniel C.
    [J]. GENOME MEDICINE, 2020, 12 (01)
  • [6] Best practices for variant calling in clinical sequencing
    Daniel C. Koboldt
    [J]. Genome Medicine, 12
  • [7] Best Practice for Clinical Somatic Variant Interpretation and Reporting
    Schubert, Jeffrey
    Wu, Jinhua
    Li, Marilyn M.
    Cao, Kajia
    [J]. CLINICS IN LABORATORY MEDICINE, 2022, 42 (03) : 423 - 434
  • [8] Best Practices in CD30 Immunohistochemistry Testing, Interpretation, and Reporting
    Gru, Alejandro A.
    Lim, Megan S.
    Dogan, Ahmet
    Horwitz, Steven M.
    Delabie, Jan
    Fu, Kai
    Peker, Deniz
    Reddy, Vishnu V. B.
    Xu, Mina L.
    Vij, Kiran
    Slack, Graham W.
    Miranda, Roberto N.
    Jagadeesh, Deepa
    Lisano, Julie M.
    Hsi, Eric D.
    Torlakovic, Emina
    [J]. ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 2023, 147 (01) : 79 - 86
  • [9] QuaC: Implementing quality control best practices for genome sequencing and exome sequencing data
    Gajapathy, Manavalan
    Wilk, Brandon
    Brown, Donna
    Worthey, Elizabeth
    [J]. GENETICS IN MEDICINE, 2022, 24 (03) : S219 - S220
  • [10] Best practices for the analytical validation of clinical whole-genome sequencing intended for the diagnosis of germline disease
    Christian R. Marshall
    Shimul Chowdhury
    Ryan J. Taft
    Mathew S. Lebo
    Jillian G. Buchan
    Steven M. Harrison
    Ross Rowsey
    Eric W. Klee
    Pengfei Liu
    Elizabeth A. Worthey
    Vaidehi Jobanputra
    David Dimmock
    Hutton M. Kearney
    David Bick
    Shashikant Kulkarni
    Stacie L. Taylor
    John W. Belmont
    Dimitri J. Stavropoulos
    Niall J. Lennon
    [J]. npj Genomic Medicine, 5