Sulfur (lone-pair)•••π interactions with FAD in flavoenzymes

被引:6
|
作者
Silva, Rui F. N. [3 ]
Sacco, Antonio Cesar S. [3 ]
Caracelli, Ignez [1 ]
Zukerman-Schpector, Julio [4 ]
Tiekink, Edward R. T. [2 ]
机构
[1] Univ Fed Sao Carlos, Dept Fis, BioMat, CP 676, BR-13565905 Sao Carlos, SP, Brazil
[2] Sunway Univ, Res Ctr Crystalline Mat, Sch Sci & Technol, Bandar Sunway 47500, Selangor Darul, Malaysia
[3] Univ Fed Sao Carlos, Programa Posgrad Biotecnol, CP 676, BR-13565905 Sao Carlos, SP, Brazil
[4] Univ Fed Sao Carlos, Dept Quim, Lab Cristalog Estereodinam & Modelagem Mol, CP 676, BR-13565905 Sao Carlos, SP, Brazil
关键词
FAD; flavoenzymes; sigma-hole; lone-pair center dot center dot center dot pi interactions; oxidoreductases; sulfur; PI INTERACTIONS; GLUTATHIONE-REDUCTASE; TRYPANOTHIONE REDUCTASE; TRYPANOSOMA-CRUZI; CRYSTAL-STRUCTURE; FLAVIN; DISULFIDE; BINDING; DERIVATIVES; COMPLEXES;
D O I
10.1515/zkri-2018-2064
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
The interactions of pi-systems with lone-pairs of electrons are known and have been described in biological systems, involving lone-pairs derived from metals, metalloids, sulfur, oxygen and nitrogen. This study describes a bibliographic survey of the disulfide-bound sulfur(lone-pair) interactions with pi-systems residing in the flavin adenine dinucleotide (FAD) cofactor of oxidoreductase enzymes (flavoenzymes). Thus, of the 172 oxidoreductase enzymes evaluated for gamma-S(lone-pair)center dot center dot center dot pi(FAD) interactions, 96 proteins (56%) exhibited these interactions corresponding; 61% of 350 the constituent monomers featured at least one gamma-S(lone-pair)center dot center dot center dot pi(FAD) interaction. Two main points of association between the S(lone-pair) and the isoalloxazine moiety of FAD were identified, namely at the centroid of the bond linking the uracil and pyrazine rings (60%), and the centroid of the uracil ring (37%). Reflecting the nature of the secondary structure in three prominent classes of oxidoreductase enzymes: glutathione disulfide reductases (GR; 21 proteins), trypanothione disulfide reductases (TR, 14) and sulfhydryl oxidases (SOX, 22), the approach of the gamma-S(lone-pair) to the FAD residue was to the si-face of the isoalloxazine ring system, i.e. to the opposite side as the carbonyl residue, for all GR and TR examples, and to the re-face for all SOX examples. Finally, the attractive nature of the gamma-S(lone-pair)center dot center dot center dot pi(FAD) interactions was confirmed qualitatively by an examination of the non-covalent interaction plots.
引用
收藏
页码:531 / 537
页数:7
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