Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania

被引:2
|
作者
Sonda, Tolbert [1 ,2 ]
Kumburu, Happiness [1 ,2 ]
van Zwetselaar, Marco [1 ]
Ahrenfeldt, Johanne [3 ]
Alifrangis, Michael [4 ,5 ]
Lund, Ole [3 ]
Kibiki, Gibson [1 ,2 ]
Aarestrup, Frank M. [6 ]
机构
[1] Kilimanjaro Christian Med Ctr, Kilimanjaro Clin Res Inst, Moshi, Tanzania
[2] Kilimanjaro Christian Med Univ Coll, Moshi, Tanzania
[3] Tech Univ Denmark, Ctr Biol Sequence Anal, Copenhagen, Denmark
[4] Univ Copenhagen, Inst Int Hlth Immunol & Microbiol, Ctr Med Parasitol, Copenhagen, Denmark
[5] Copenhagen Univ Hosp, Dept Infect Dis, Copenhagen, Denmark
[6] Tech Univ Denmark, Ctr Genom Epidemiol, Copenhagen, Denmark
来源
关键词
D O I
10.1017/ice.2016.28
中图分类号
R1 [预防医学、卫生学];
学科分类号
1004 ; 120402 ;
摘要
引用
收藏
页码:622 / +
页数:2
相关论文
共 50 条
  • [1] Whole-Genome Sequencing During Measles Outbreaks
    Rota, Paul A.
    Bankamp, Bettina
    [J]. JOURNAL OF INFECTIOUS DISEASES, 2015, 212 (10): : 1529 - 1530
  • [2] Mutation mapping and identification by whole-genome sequencing
    Leshchiner, Ignaty
    Alexa, Kristen
    Kelsey, Peter
    Adzhubei, Ivan
    Austin-Tse, Christina A.
    Cooney, Jeffrey D.
    Anderson, Heidi
    King, Matthew J.
    Stottmann, Rolf W.
    Garnaas, Maija K.
    Ha, Seungshin
    Drummond, Iain A.
    Paw, Barry H.
    North, Trista E.
    Beier, David R.
    Goessling, Wolfram
    Sunyaev, Shamil R.
    [J]. GENOME RESEARCH, 2012, 22 (08) : 1541 - 1548
  • [3] Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis
    Quainoo, Scott
    Coolen, Jordy P. M.
    van Hijum, Sacha A. F. T.
    Huynen, Martijn A.
    Melchers, Willem J. G.
    van Schaik, Willem
    Wertheim, Heiman F. L.
    [J]. CLINICAL MICROBIOLOGY REVIEWS, 2017, 30 (04) : 1015 - 1063
  • [4] Whole-Genome Sequencing Elucidates Epidemiology of Nosocomial Clusters of Acinetobacter baumannii
    Willems, Stefanie
    Kampmeier, Stefanie
    Bletz, Stefan
    Kossow, Annelene
    Koeck, Robin
    Kipp, Frank
    Mellmann, Alexander
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2016, 54 (09) : 2391 - 2394
  • [5] Use of Whole-Genome Sequencing in the Investigation of a Nosocomial Influenza Virus Outbreak
    Houlihan, Catherine F.
    Frampton, Dan
    Ferns, R. Bridget
    Raffle, Jade
    Grant, Paul
    Reidy, Myriam
    Hail, Leila
    Thomson, Kirsty
    Mattes, Frank
    Kozlakidis, Zisis
    Pillay, Deenan
    Hayward, Andrew
    Nastouli, Eleni
    [J]. JOURNAL OF INFECTIOUS DISEASES, 2018, 218 (09): : 1485 - 1489
  • [6] Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks
    Wagner, Darlene D.
    Carleton, Heather A.
    Trees, Eija
    Katz, Lee S.
    [J]. PEERJ, 2021, 9
  • [7] Whole-genome sequencing
    Morris, Huw R.
    Houlden, Henry
    Polke, James
    [J]. PRACTICAL NEUROLOGY, 2021, 21 (04) : 322 - +
  • [8] Haemagglutinin and neuraminidase sequencing delineate nosocomial influenza outbreaks with accuracy equivalent to whole genome sequencing
    Houghton, Rebecca
    Ellis, Joanna
    Galiano, Monica
    Clark, Tristan W.
    Wyllie, Sarah
    [J]. JOURNAL OF INFECTION, 2017, 74 (04) : 377 - 384
  • [9] Whole-genome sequencing: identification of additional pathogenic variation across the genome
    Mills, James Dominic
    Sisodiya, Sanjay M.
    [J]. BRAIN COMMUNICATIONS, 2021, 3 (04)
  • [10] mSphere of Influence: Whole-Genome Sequencing, a Vital Tool for the Interruption of Nosocomial Transmission
    Babiker, Ahmed
    [J]. MSPHERE, 2021, 6 (02): : 1 - 3