pedagog: software for simulating eco-evolutionary population dynamics

被引:23
|
作者
Coombs, Jason A. [1 ]
Letcher, B. H. [2 ]
Nislow, K. H. [3 ]
机构
[1] Univ Massachusetts, Program Organism & Evolutionary Biol, Amherst, MA 01003 USA
[2] US Geol Survey, SO Conte Anadromous Fish Res Ctr, Leetown Sci Ctr, Turners Falls, MA 01376 USA
[3] Univ Massachusetts, US Forest Serv, No Res Stn, Amherst, MA 01003 USA
关键词
genotypes; heritability; natural selection; pedigree; sexual selection; traits; PROGRAM; SIZE; ALLELES; NUMBER; MODEL;
D O I
10.1111/j.1755-0998.2009.02803.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
pedagog is a Windows program that can be used to determine power for, and validate inferences drawn from, eco-evolutionary studies. It models dynamics of multiple populations and their interactions through individual-based simulations while simultaneously recording genotype, pedigree and trait information at the individual level. pedagog also allows for specification of heritable traits, natural and sexual selection acting upon those traits, population sampling schemes and incorporation of genetic and demographic errors into the output. Overall, parameters can be specified for genetic diversity, demographics, mating design, genetic and demographic errors, individual growth models, trait heritability and selection, and output formatting. Demographic parameters can be either age or function based, and all parameters can be drawn from 12 statistical distributions where appropriate. Simulation results can be automatically formatted for 57 existing software programs to facilitate postsimulation analyses. pedagog is freely available for download at https://bcrc.bio.umass.edu/pedigreesoftware/.
引用
收藏
页码:558 / 563
页数:6
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