Throughput oriented high level synthesis allows efficient design and optimization using parallel input languages. Parallel languages offer the benefit of parallelism extraction at multiple levels of granularity, offering effective design space exploration to select efficient single core implementations, and easy scaling of parallelism through multiple core instantiations. However, study of high level synthesis for parallel languages has concentrated on optimization of core and on-chip communications, while neglecting platform integration, which can have a significant impact on achieved performance. In this paper, we create an automated flow to perform efficient platform integration for an existing CUDAto-RTL throughput oriented HLS, and we open source the FCUDA tool, platform integration, and benchmark applications. We demonstrate platform integration of 16 benchmarks on two Zynq-based systems in bare-metal and OS mode. We study implementation optimization for platform integration, compare to an embedded GPU (Tegra TK1) and verify designs on a Zedboard Zynq 7020 (bare-metal) and Omnitek Zynq 7045 (OS).