simuG: a general-purpose genome simulator

被引:23
|
作者
Yue, Jia-Xing [1 ]
Liti, Gianni [1 ]
机构
[1] Univ Cote Azur, CNRS, INSERM, IRCAN, F-06107 Nice, France
关键词
D O I
10.1093/bioinformatics/btz424
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Simulated genomes with pre-defined and random genomic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for simulating the full-spectrum of genomic variants (single nucleotide polymorphisms, Insertions/Deletions, copy number variants, inversions and translocations) for any organisms (including human). The simplicity and versatility of simuG make it a unique general-purpose genome simulator for a wide-range of simulation-based applications.
引用
收藏
页码:4442 / 4444
页数:3
相关论文
共 50 条
  • [1] A GENERAL-PURPOSE FORECAST SIMULATOR
    GROSS, D
    RAY, JL
    [J]. MANAGEMENT SCIENCE, 1965, 11 (06) : B119 - B135
  • [2] A GENERAL-PURPOSE SYSTEMS SIMULATOR
    GORDON, G
    [J]. IBM SYSTEMS JOURNAL, 1962, 1 (SEP) : 18 - 32
  • [3] DIGITAL COMPUTER AS A GENERAL-PURPOSE SIMULATOR
    BRAUN, L
    [J]. JOURNAL OF EDUCATIONAL DATA PROCESSING, 1970, 7 (03): : 151 - &
  • [4] A GENERAL-PURPOSE MEMORY RELIABILITY SIMULATOR
    LIBSON, MR
    HARVEY, HE
    [J]. IBM JOURNAL OF RESEARCH AND DEVELOPMENT, 1984, 28 (02) : 196 - 205
  • [5] A general-purpose simulator for train operations
    Ho, TK
    Mao, BH
    Yang, ZX
    Yuan, ZZ
    [J]. TRAFFIC AND TRANSPORTATION STUDIES, 1998, : 830 - 839
  • [6] General-purpose parallel simulator for quantum computing
    Niwa, J
    Matsumoto, K
    Imai, H
    [J]. UNCONVENTIONAL MODELS IN COMPUTATION, PROCEEDINGS, 2002, 2509 : 230 - 251
  • [7] GPSS III - AN EXPANDED GENERAL-PURPOSE SIMULATOR
    HERSCOVITCH, H
    SCHNEIDER, TH
    [J]. IBM SYSTEMS JOURNAL, 1965, 4 (03) : 174 - 183
  • [8] GENERAL-PURPOSE SIMULATOR OF MINERAL PROCESSING OPERATIONS
    MCKEE, D
    [J]. CIM BULLETIN, 1985, 78 (878): : 86 - 86
  • [9] General-purpose parallel simulator for quantum computing
    Niwa, J
    Matsumoto, K
    Imai, H
    [J]. PHYSICAL REVIEW A, 2002, 66 (06) : 11
  • [10] THE ARCHITECTURE OF NEWTON, A GENERAL-PURPOSE DYNAMICS SIMULATOR
    CREMER, JF
    STEWART, AJ
    [J]. PROCEEDINGS - 1989 IEEE INTERNATIONAL CONFERENCE ON ROBOTICS AND AUTOMATION, VOL 1-3, 1989, : 1806 - 1811