Exploring protein symmetry at the RCSB Protein Data Bank

被引:5
|
作者
Duarte, Jose M. [1 ]
Dutta, Shuchismita [2 ,3 ,4 ]
Goodsell, David S. [2 ,3 ,4 ,5 ]
Burley, Stephen K. [1 ,2 ,3 ,4 ,6 ]
机构
[1] Univ Calif San Diego, Res Collab Struct Bioinformat, Prot Data Bank, San Diego Supercomp Ctr, La Jolla, CA 92093 USA
[2] Rutgers State Univ, Res Collaboratory Struct Bioinformat, Prot Data Bank, Piscataway, NJ 08854 USA
[3] Rutgers State Univ, Inst Quantitat Biomed, Piscataway, NJ 08854 USA
[4] Rutgers State Univ, Rutgers Canc Inst New Jersey, Piscataway, NJ 08854 USA
[5] Scripps Res Inst, La Jolla, CA 92037 USA
[6] Rutgers State Univ, Dept Chem & Chem Biol, Piscataway, NJ 08854 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
BIOLOGICAL MACROMOLECULES; ASSEMBLIES; VALIDATION; PRINCIPLES; DYNAMICS; ASPARTATE; TOOLS; PDB;
D O I
10.1042/ETLS20210267
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The symmetry of biological molecules has fascinated structural biologists ever since the structure of hemoglobin was determined. The Protein Data Bank (PDB) archive is the central global archive of three-dimensional (3D), atomic-level structures of biomolecules, providing open access to the results of structural biology research with no limitations on usage. Roughly 40% of the structures in the archive exhibit some type of symmetry, including formal global symmetry, local symmetry, or pseudosymmetry. The Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (founding member of the Worldwide Protein Data Bank partnership that jointly manages, curates, and disse-minates the archive) provides a variety of tools to assist users interested in exploring the symmetry of biological macromolecules. These tools include multiple modalities for searching and browsing the archive, turnkey methods for biomolecular visualization, documentation, and outreach materials for exploring functional biomolecular symmetry.
引用
收藏
页码:231 / 243
页数:13
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