High genetic diversity of the harmful algal bloom species Phaeocystis globosa revealed using the molecular marker COX1

被引:22
|
作者
Song, Huiyin [1 ,2 ,4 ]
Chen, Yang [1 ,2 ,3 ,4 ]
Gibson, Kate [5 ]
Liu, Shuya [1 ,2 ,4 ]
Yu, Zhiming [1 ,2 ,3 ,4 ]
Chen, Nansheng [1 ,2 ,4 ,5 ]
机构
[1] Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China
[2] Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 10049, Peoples R China
[4] Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China
[5] Simon Fraser Univ, Dept Mol Biol & Biochem, 8888 Univ Dr, Burnaby, BC V5A 1S6, Canada
关键词
Harmful algal bloom; Molecular marker; Intra-genome variation; Phylogeny; Genetic diversity; COX1; CHINA; PRYMNESIOPHYCEAE; MITOCHONDRIAL; ALIGNMENT; TAXONOMY; NUCLEAR;
D O I
10.1016/j.hal.2021.102065
中图分类号
Q17 [水生生物学];
学科分类号
071004 ;
摘要
Accumulating evidence indicates that the haptophyte species Phaeocystis globosa, which plays an important role in climate control and may cause harmful algal blooms (HABs), displays a rich genetic diversity that may be responsible for differences in colonial sizes, different toxicity during blooms, and differential optimum growth temperature. In this project, we demonstrated that COX1 can be used as an effective molecular marker for its low intra-genome variations and high resolution in differentiating different P. globosa strains. Analyzing 57 P. globosa strains and seven field samples revealed high P. globosa genetic diversity with at least seven distinct clades. This study not only demonstrated for the first time that the common molecular marker COX1 can be used for differentiating P. globosa strains with high-resolution, and for tracking dynamics of different P. globosa strains during bloom development, but also revealed that P. globosa had high genetic diversity in the field.
引用
收藏
页数:10
相关论文
共 39 条
  • [1] Giantism and its role in the harmful algal bloom species Phaeocystis globosa
    Smith, Walker O., Jr.
    Liu, Xiao
    Tang, Kam W.
    DeLizo, Liza M.
    Nhu Hai Doan
    Ngoc Lam Nguyen
    Wang, Xiaodong
    [J]. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY, 2014, 101 : 95 - 106
  • [2] Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa
    Baudoux, AC
    Brussaard, CPD
    [J]. VIROLOGY, 2005, 341 (01) : 80 - 90
  • [3] Comparative transcriptomics reveals colony formation mechanism of a harmful algal bloom species Phaeocystis globosa
    Zhang, Shu-Feng
    Zhang, Kun
    Cheng, Hua-Min
    Lin, Lin
    Wang, Da-Zhi
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2020, 719
  • [4] Streptomyces alboflavus RPS and Its Novel and High Algicidal Activity against Harmful Algal Bloom Species Phaeocystis globosa
    Zhang, Bangzhou
    Cai, Guanjing
    Wang, Haitao
    Li, Dong
    Yang, Xujun
    An, Xinli
    Zheng, Xiaowei
    Tian, Yun
    Zheng, Wei
    Zheng, Tianling
    [J]. PLOS ONE, 2014, 9 (03):
  • [5] A marine algicidal actinomycete and its active substance against the harmful algal bloom species Phaeocystis globosa
    Xiaowei Zheng
    Bangzhou Zhang
    Jinlong Zhang
    Liping Huang
    Jing Lin
    Xinyi Li
    Yanyan Zhou
    Hui Wang
    Xiaoru Yang
    Jianqiang Su
    Yun Tian
    Tianling Zheng
    [J]. Applied Microbiology and Biotechnology, 2013, 97 : 9207 - 9215
  • [6] A marine algicidal actinomycete and its active substance against the harmful algal bloom species Phaeocystis globosa
    Zheng, Xiaowei
    Zhang, Bangzhou
    Zhang, Jinlong
    Huang, Liping
    Lin, Jing
    Li, Xinyi
    Zhou, Yanyan
    Wang, Hui
    Yang, Xiaoru
    Su, Jianqiang
    Tian, Yun
    Zheng, Tianling
    [J]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2013, 97 (20) : 9207 - 9215
  • [7] Intragenomic variations of the harmful algal bloom species Phaeocystis globosa through single-strain metabarcoding analysis
    Wang, Yifei
    Chen, Nansheng
    [J]. Marine Pollution Bulletin, 2024, 209
  • [8] Research on the biology and ecology of the harmful algal bloom species Phaeocystis globosa in China: Progresses in the last 20 years
    Wang, Xiaodong
    Song, Huiyin
    Wang, Yan
    Chen, Nansheng
    [J]. HARMFUL ALGAE, 2021, 107
  • [9] Subtle biological responses to increased CO2 concentrations by Phaeocystis globosa Scherffel, a harmful algal bloom species
    Wang, Yan
    Smith, Walker O., Jr.
    Wang, Xiaodong
    Li, Shaoshan
    [J]. GEOPHYSICAL RESEARCH LETTERS, 2010, 37
  • [10] Chromosome-scale genome assembly reveals insights into the evolution and ecology of the harmful algal bloom species Phaeocystis globosa Scherffel
    Chen, Nansheng
    Xu, Qing
    Zhu, Jianan
    Song, Huiyin
    He, Liyan
    Liu, Shuya
    Song, Xiuxian
    Yuan, Yongquan
    Chen, Yang
    Cao, Xihua
    Yu, Zhiming
    [J]. ISCIENCE, 2024, 27 (08)