ProHits-viz: a suite of web tools for visualizing interaction proteomics data

被引:120
|
作者
Knight, James D. R. [1 ]
Choi, Hyungwon [2 ,3 ,4 ]
Gupta, Gagan D. [1 ]
Peltetier, Laurence [1 ,5 ]
Raught, Brian [6 ,7 ]
Nesvizhskii, Atexey I. [8 ,9 ]
Gingras, Anne-Claude [1 ,5 ]
机构
[1] Sinai Hlth Syst, Lunenfeld Tanenbaum Res Inst, Toronto, ON, Canada
[2] Natl Univ Singapore, Saw Swee Hock Sch Publ Hlth, Singapore, Singapore
[3] Natl Univ Hlth Syst, Singapore, Singapore
[4] Agcy Sci Technol & Res, Inst Mol & Cell Biol, Singapore, Singapore
[5] Univ Toronto, Dept Mol Genet, Toronto, ON, Canada
[6] Univ Hlth Network, Princess Margaret Canc Ctr, Toronto, ON, Canada
[7] Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
[8] Univ Michigan, Dept Pathol, Ann Arbor, MI 48109 USA
[9] Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA
基金
美国国家卫生研究院; 加拿大健康研究院;
关键词
MASS SPECTROMETRY DATA;
D O I
10.1038/nmeth.4330
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:645 / 646
页数:2
相关论文
共 10 条
  • [1] ProHits-viz: a suite of web tools for visualizing interaction proteomics data
    James D R Knight
    Hyungwon Choi
    Gagan D Gupta
    Laurence Pelletier
    Brian Raught
    Alexey I Nesvizhskii
    Anne-Claude Gingras
    Nature Methods, 2017, 14 : 645 - 646
  • [2] msVolcano: A flexible web application for visualizing quantitative proteomics data
    Singh, Sukhdeep
    Hein, Marco Y.
    Stewart, A. Francis
    PROTEOMICS, 2016, 16 (18) : 2491 - 2494
  • [3] MixProTool: A Powerful and Comprehensive Web Tool for Analyzing and Visualizing Multigroup Proteomics Data
    Wang, Shisheng
    Zheng, Wen
    Hu, Liqiang
    Gong, Meng
    Yang, Hao
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2018, 25 (10) : 1123 - 1127
  • [4] OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
    Lohse, Marc
    Drechsel, Oliver
    Kahlau, Sabine
    Bock, Ralph
    NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) : W575 - W581
  • [5] A web-tool for visualizing quantitative protein-protein interaction data
    Knight, James D. R.
    Liu, Guomin
    Zhang, Jian Ping
    Pasculescu, Adrian
    Choi, Hyungwon
    Gingras, Anne-Claude
    PROTEOMICS, 2015, 15 (08) : 1432 - 1436
  • [6] Web based tools for visualizing maging data and development of XNATView a zero footprint image viewer
    Gutman, David A.
    Dunn, William D., Jr.
    Cobb, Jake
    Stoner, Richard M.
    Kalpathy-Cramer, Jayashree
    Erickson, Bradley
    FRONTIERS IN NEUROINFORMATICS, 2014, 8
  • [7] XLink-DB: Database and Software Tools for Storing and Visualizing Protein Interaction Topology Data
    Zheng, Chunxiang
    Weisbrod, Chad R.
    Chavez, Juan D.
    Eng, Jimmy K.
    Sharma, Vagisha
    Wu, Xia
    Bruce, James E.
    JOURNAL OF PROTEOME RESEARCH, 2013, 12 (04) : 1989 - 1995
  • [8] The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
    Cote, Richard G.
    Griss, Johannes
    Dianes, Jose A.
    Wang, Rui
    Wright, James C.
    van den Toorn, Henk W. P.
    van Breukelen, Bas
    Heck, Albert J. R.
    Hulstaert, Niels
    Martens, Lennart
    Reisinger, Florian
    Csordas, Attila
    Ovelleiro, David
    Perez-Rivevol, Yasset
    Barsnes, Harald
    Hermjakob, Henning
    Vizcaino, Juan Antonio
    MOLECULAR & CELLULAR PROTEOMICS, 2012, 11 (12) : 1682 - 1689
  • [9] PPIExp: A Web-Based Platform for Integration and Visualization of Protein-Protein Interaction Data and Spatiotemporal Proteomics Data
    Liu, Xian
    Chang, Cheng
    Han, Mingfei
    Yin, Ronghua
    Zhan, Yiqun
    Li, Changyan
    Ge, Changhui
    Yu, Miao
    Yang, Xiaoming
    JOURNAL OF PROTEOME RESEARCH, 2019, 18 (02) : 633 - 641
  • [10] Tools-4-Metatool (T4M): Online suite of web-tools to process stoichiometric network analysis data from Metatool
    Xavier, Daniela
    Vazquez, Sara
    Higuera, Clara
    Moran, Federico
    Montero, Francisco
    BIOSYSTEMS, 2011, 105 (02) : 169 - 172