Integrated open-source software for multiscale electrophysiology

被引:14
|
作者
Nasiotis, Konstantinos [1 ]
Cousineau, Martin [1 ]
Tadel, Francois [2 ]
Peyrache, Adrien [1 ]
Leahy, Richard M. [3 ]
Pack, Christopher C. [1 ]
Baillet, Sylvain [1 ]
机构
[1] McGill Univ, Montreal Neurol Inst, Montreal, PQ, Canada
[2] Grenoble Inst Neurosci, Grenoble, France
[3] Univ Southern Calif, Inst Signal & Image Proc, Los Angeles, CA 90089 USA
基金
加拿大自然科学与工程研究理事会; 美国国家卫生研究院;
关键词
OSCILLATORY NEURONAL SYNCHRONIZATION; VISUAL-CORTEX; FUNCTIONAL CONNECTIVITY; EEG; STIMULATION; INFORMATION; VARIABILITY; MODULATION; FORMAT; MEMORY;
D O I
10.1038/s41597-019-0242-z
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The methods for electrophysiology in neuroscience have evolved tremendously over the recent years with a growing emphasis on dense-array signal recordings. Such increased complexity and augmented wealth in the volume of data recorded, have not been accompanied by efforts to streamline and facilitate access to processing methods, which too are susceptible to grow in sophistication. Moreover, unsuccessful attempts to reproduce peer-reviewed publications indicate a problem of transparency in science. This growing problem could be tackled by unrestricted access to methods that promote research transparency and data sharing, ensuring the reproducibility of published results. Here, we provide a free, extensive, open-source software that provides data-analysis, data-management and multi-modality integration solutions for invasive neurophysiology. Users can perform their entire analysis through a user-friendly environment without the need of programming skills, in a tractable (logged) way. This work contributes to open-science, analysis standardization, transparency and reproducibility in invasive neurophysiology.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] Integrated open-source software for multiscale electrophysiology
    Konstantinos Nasiotis
    Martin Cousineau
    François Tadel
    Adrien Peyrache
    Richard M. Leahy
    Christopher C. Pack
    Sylvain Baillet
    [J]. Scientific Data, 6
  • [2] Multiscale Electrophysiology Format: An Open-source Electrophysiology Format Using Data Compression, Encryption, and Cyclic Redundancy Check
    Brinkmann, Benjamin H.
    Bower, Mark R.
    Stengel, Keith A.
    Worrell, Gregory A.
    Stead, Matt
    [J]. 2009 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-20, 2009, : 7083 - +
  • [3] An open-source software framework for the integrated simulation of structures in fire
    Khan, Aatif Ali
    Khan, Mustesin Ali
    Cashell, Katherine A.
    Usmani, Asif
    [J]. FIRE SAFETY JOURNAL, 2023, 140
  • [4] Closed-loop, open-source electrophysiology
    Rolston, John D.
    Gross, Robert E.
    Potter, Steve M.
    [J]. FRONTIERS IN NEUROSCIENCE, 2010, 4
  • [5] ElectroMap: High-throughput open-source software for analysis and mapping of cardiac electrophysiology
    Christopher O’Shea
    Andrew P. Holmes
    Ting Y. Yu
    James Winter
    Simon P. Wells
    Joao Correia
    Bastiaan J. Boukens
    Joris R. De Groot
    Gavin S. Chu
    Xin Li
    G. Andre Ng
    Paulus Kirchhof
    Larissa Fabritz
    Kashif Rajpoot
    Davor Pavlovic
    [J]. Scientific Reports, 9
  • [6] Open-source software - Introduction
    Sabbah, D
    Frye, D
    [J]. IBM SYSTEMS JOURNAL, 2005, 44 (02)
  • [7] Open-source bioinformatics software
    Vlagioiu, Constantin
    Vuta, Vlad
    Barbuceanu, Florica
    Predoi, Gabriel
    Tudor, Nicolae
    [J]. JOURNAL OF BIOTECHNOLOGY, 2017, 256 : S53 - S53
  • [8] ElectroMap: High-throughput open-source software for analysis and mapping of cardiac electrophysiology
    O'Shea, Christopher
    Holmes, Andrew P.
    Yu, Ting Y.
    Winter, James
    Wells, Simon P.
    Correia, Joao
    Boukens, Bastiaan J.
    De Groot, Joris R.
    Chu, Gavin S.
    Li, Xin
    Ng, G. Andre
    Kirchhof, Paulus
    Fabritz, Larissa
    Rajpoot, Kashif
    Pavlovic, Davor
    [J]. SCIENTIFIC REPORTS, 2019, 9 (1)
  • [9] Open-source software for repositories
    Vasilyeva, Natalya V.
    [J]. NAUCHNYE I TEKHNICHESKIE BIBLIOTEKI-SCIENTIFIC AND TECHNICAL LIBRARIES, 2023, (03): : 102 - 119
  • [10] Robust open-source software
    Neumann, PG
    [J]. COMMUNICATIONS OF THE ACM, 1999, 42 (02) : 128 - 128