PLMltRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNA in photosynthetic eukaryotes

被引:5
|
作者
Rainaldi, G
Volpicella, M
Licciulli, F
Liuni, S
Gallerani, R
Ceci, LR
机构
[1] Univ Bari, Dipartmento Biochim & Biol Mol, I-70126 Bari, Italy
[2] CNR, Ctr Studio Mitocondri & Metab Energet, I-70126 Bari, Italy
关键词
D O I
10.1093/nar/gkg080
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The updated version of PLMItRNA reports information and multialignment on 609 genes and 34 tRNA molecules active in the mitochondria of Viridiplantae ( 27 Embryophyta and 10 Chlorophyta), and photosynthetic algae ( one Cryptophyta, four Rhodophyta and two Stramenopiles). Colour- code based tables reporting the different genetic origin of identified genes allow hyper- textual link to single entries. Promoter sequences identified for tRNA genes in the mitochondrial genomes of Angiospermae are also reported. The PLMItRNA database is accessible at http: / / bighost. area. ba. cnr. it/ PLMItRNA/.
引用
收藏
页码:436 / 438
页数:3
相关论文
共 50 条
  • [1] PLMltRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes
    Damiano, F
    Gallerani, R
    Liuni, S
    Licciulli, F
    Ceci, LR
    [J]. NUCLEIC ACIDS RESEARCH, 2001, 29 (01) : 167 - 168
  • [2] Permuted tRNA Genes in the Nuclear and Nucleomorph Genomes of Photosynthetic Eukaryotes
    Maruyama, Shinichiro
    Sugahara, Junichi
    Kanai, Akio
    Nozaki, Hisayoshi
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2010, 27 (05) : 1070 - 1076
  • [3] Diversity of tRNA genes in eukaryotes
    Goodenbour, Jeffrey M.
    Pan, Tao
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 (21) : 6137 - 6146
  • [4] PLMItRNA, a database for higher plant mitochondrial tRNAs and tRNA genes
    Ceci, LR
    Volpicella, M
    Liuni, S
    Volpetti, V
    Licciulli, F
    Gallerani, R
    [J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (01) : 156 - 157
  • [5] tRNA genes and the genetic code
    Foltan, Jaromir S.
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2008, 253 (03) : 469 - 482
  • [6] Mamit-tRNA, a database of mammalian mitochondrial tRNA primary and secondary structures
    Putz, Joern
    Dupuis, Bruno
    Sissler, Marie
    Florentz, Catherine
    [J]. RNA, 2007, 13 (08) : 1184 - 1190
  • [7] Novel mutations in mitochondrial tRNA genes
    Ortiz, S. E.
    Lopez-Gallardo, E.
    del Mar O'Callaghan, M.
    Pineda, M.
    Infante, E. R.
    Romero, M. C.
    Ruiz-Pesini, E.
    Montoya, J.
    [J]. FEBS JOURNAL, 2012, 279 : 323 - 324
  • [8] DNA polymorphisms in mitochondrial (mt) tRNA genes
    Seneca, S
    De Meirleir, L
    Lissens, W
    Liebaers, I
    [J]. EUROPEAN JOURNAL OF HUMAN GENETICS, 1998, 6 : 133 - 133
  • [9] Permuted tRNA genes of Cyanidioschyzon merolae, the origin of the tRNA molecule and the root of the Eukarya domain
    Di Giulio, Massimo
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2008, 253 (03) : 587 - 592
  • [10] On origin of genetic code and tRNA before translation
    Rodin, Andrei S.
    Szathmary, Eoers
    Rodin, Sergei N.
    [J]. BIOLOGY DIRECT, 2011, 6