Distribution and diversity of eukaryotic microalgae in Kuwait waters assessed using 18S rRNA gene sequencing

被引:6
|
作者
Kumar, Vinod [1 ]
Al Momin, Sabah [1 ]
Kumar, Vanitha V. [1 ]
Ahmed, Jasim [1 ]
Al-Musallam, Lamya [1 ]
Shajan, Anisha B. [1 ]
Al-Aqeel, Hamed [1 ]
Al-Mansour, Hamad [1 ]
Al-Zakri, Walid M. [1 ]
机构
[1] Kuwait Inst Sci Res, Environm & Life Sci Res Ctr, Kuwait, Kuwait
来源
PLOS ONE | 2021年 / 16卷 / 04期
关键词
HARMFUL ALGAL BLOOMS; MARINE MICROBIAL ENZYMES; PHYTOPLANKTON COMMUNITY; COASTAL WATERS; CLIMATE-CHANGE; ARABIAN GULF; DINOFLAGELLATE; SEA; POLLUTION; DIATOM;
D O I
10.1371/journal.pone.0250645
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The microbial communities play a crucial role in ecosystem functioning through interactions among individuals and taxonomic groups in a highly dynamic marine ecosystem. The structure and functioning of the microbial communities are often influenced by the changes in the surrounding environment. Monitoring the microbial diversity of the marine ecosystem helps to understand spatial patterns of microbial community and changes due to season, climate, and various drivers of biological diversity. Kuwait is characterized by an arid environment with a high degree of temperature variation during summer and winter. Our understanding of spatial distribution patterns of microbial communities, their diversity, and the influence of human activities on the degree of changes in the diversity of the microbial community in Kuwait territorial waters remain unclear. In this study, we employed 18S rRNA sequencing to explore marine microalgal community composition and dynamics in seawater samples collected from Kuwait waters over two seasonal cycles across six locations. A total of 448,184 sequences across 36 replicates corresponding to 12 samples from six stations were obtained. The quality-filtered sequences were clustered into 1,293 representative sequences, which were then classified into different eukaryotic taxa. This study reveals that the phytoplankton community in Kuwait waters is diverse and shows significant variations among different taxa during summer and winter. Dinoflagellates and diatoms were the most abundant season-dependent microalgae taxa in Kuwait waters. Alexandrium and Pyrophacus were abundant in summer, whereas Gonyaulax was abundant during the winter. The abundance of Coscinodiscus and Navicula, of the diatom genera, were also dependent upon both seasonal and possible anthropogenic factors. Our results demonstrate the effectiveness of a sequencing-based approach, which could be used to improve the accuracy of quantitative eukaryotic microbial community profiles.
引用
收藏
页数:25
相关论文
共 50 条
  • [1] Exploring the eukaryotic diversity in rumen of Indian camel (Camelus dromedarius) using 18S rRNA amplicon sequencing
    Priyaranjan Mishra
    Nilam J. Tulsani
    Subhash J. Jakhesara
    Nishant A. Dafale
    Niteen V. Patil
    Hemant J. Purohit
    Prakash G. Koringa
    Chaitanya G. Joshi
    [J]. Archives of Microbiology, 2020, 202 : 1861 - 1872
  • [2] Exploring the eukaryotic diversity in rumen of Indian camel (Camelus dromedarius) using 18S rRNA amplicon sequencing
    Mishra, Priyaranjan
    Tulsani, Nilam J.
    Jakhesara, Subhash J.
    Dafale, Nishant A.
    Patil, Niteen, V
    Purohit, Hemant J.
    Koringa, Prakash G.
    Joshi, Chaitanya G.
    [J]. ARCHIVES OF MICROBIOLOGY, 2020, 202 (07) : 1861 - 1872
  • [3] Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia
    Hugerth, Luisa W.
    Muller, Emilie E. L.
    Hu, Yue O. O.
    Lebrun, Laura A. M.
    Roume, Hugo
    Lundin, Daniel
    Wilmes, Paul
    Andersson, Anders F.
    [J]. PLOS ONE, 2014, 9 (04):
  • [4] Eukaryotic Community in UASB Reactor Treating Domestic Sewage Based on 18S rRNA Gene Sequencing
    Hirakata, Y.
    Hatamoto, M.
    Oshiki, M.
    Araki, N.
    Yamaguchi, T.
    [J]. FRONTIERS IN WASTEWATER TREATMENT AND MODELLING, FICWTM 2017, 2017, 4 : 218 - 224
  • [5] The diversity of fungi in aerobic sewage granules assessed by 18S rRNA gene and ITS sequence analyses
    Weber, Silvia D.
    Hofmann, Andreas
    Pilhofer, Martin
    Wanner, Gerhard
    Agerer, Reinhard
    Ludwig, Wolfgang
    Schleifer, Karl-Heinz
    Fried, Johannes
    [J]. FEMS MICROBIOLOGY ECOLOGY, 2009, 68 (02) : 246 - 254
  • [6] Comparison of eukaryotic phytobenthic community composition in a polluted river by partial 18S rRNA gene cloning and sequencing
    Dorigo, U
    Bérard, A
    Humbert, JF
    [J]. MICROBIAL ECOLOGY, 2002, 44 (04) : 372 - 380
  • [7] Comparison of Eukaryotic Phytobenthic Community Composition in a Polluted River by Partial 18S rRNA Gene Cloning and Sequencing
    U. Dorigo
    A. Bérard
    J.F. Humbert
    [J]. Microbial Ecology, 2002, 44 : 372 - 380
  • [8] Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis
    Tian, Fei
    Yu, Yong
    Chen, Bo
    Li, Huirong
    Yao, Yu-Feng
    Guo, Xiao-Kui
    [J]. POLAR BIOLOGY, 2009, 32 (01) : 93 - 103
  • [9] Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis
    Fei Tian
    Yong Yu
    Bo Chen
    Huirong Li
    Yu-Feng Yao
    Xiao-Kui Guo
    [J]. Polar Biology, 2009, 32 : 93 - 103
  • [10] Structural diversity of eukaryotic 18S rRNA and its impact on alignment and phylogenetic reconstruction
    Qiang Xie
    Jinzhong Lin
    Yan Qin
    Jianfu Zhou
    Wenjun Bu
    [J]. Protein & Cell., 2011, 2 (02) - 170