Complete mitochondrial genomes of six species of the freshwater red algal order Batrachospermales (Rhodophyta)
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作者:
Paiano, Monica O.
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Sao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, BrazilSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, Brazil
Paiano, Monica O.
[1
]
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Del Cortona, Andrea
[2
]
Costa, Joana F.
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机构:
Univ Melbourne, Sch Biosci, Melbourne, Vic, AustraliaSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, Brazil
Costa, Joana F.
[3
]
Liu, Shao-Lun
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机构:
Tunghai Univ, Dept Life Sci, Taichung, TaiwanSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, Brazil
Liu, Shao-Lun
[4
]
Verbruggen, Heroen
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机构:
Univ Melbourne, Sch Biosci, Melbourne, Vic, AustraliaSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, Brazil
Verbruggen, Heroen
[3
]
De Clerck, Olivier
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Univ Ghent, Phycol Res Grp, Ghent, BelgiumSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, Brazil
De Clerck, Olivier
[2
]
Necchi Jr, Orlando
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Sao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, BrazilSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, Brazil
Necchi Jr, Orlando
[1
]
机构:
[1] Sao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, SP, Brazil
[2] Univ Ghent, Phycol Res Grp, Ghent, Belgium
[3] Univ Melbourne, Sch Biosci, Melbourne, Vic, Australia
Batrachospermales;
COI gene;
conserved genomes;
genome organization;
intron;
Rhodophyta;
MAJOR LINEAGES;
EVOLUTION;
D O I:
10.1080/23802359.2018.1473734
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
Only two mitochondrial (mt) genomes had been reported in members of the red algal order Batrachospermales, which are confined to freshwater habitats. Additional mt genomes of six representative members (Batrachospermum macrosporum, Kumanoa ambigua, K. mahlacensis, Paralemanea sp., Sheathia arcuata, and Sirodotia delicatula) were sequenced aiming to gain insights on the evolution of their mt genomes from a comparative analysis with other red algal groups. Mt genomes sequenced had the following characteristics: lengths ranging between 24,864 nt and 29,785 nt, 22 to 26 protein-coding genes, G+C contents of 21.3 to 30.7%, number of tRNA of 16 to 37, non-coding DNA from 3.8% to 14.8%. Comparative analysis revealed that mt genomes in Batrachospermales are highly conserved in terms of genome size and gene content and synteny. Phylogenetic analyses based on COI nucleotide data revealed high bootstrap support only for the genera usually recovered in the phylogenetic analyses but no support for supra-generic groups. The insertion of a group II intron carrying an ORF coding for the corresponding intron maturase interrupting the COI gene was observed in Paralamenea sp. and accounted for its larger genome in comparison to the other Batrachospermales mt genomes.
机构:
Sao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, BrazilSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, Brazil
Paiano, Monica Orlandi
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Del Cortona, Andrea
Costa, Joana F.
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机构:
Univ Melbourne, Sch Biosci, Melbourne, Vic 3010, AustraliaSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, Brazil
Costa, Joana F.
Liu, Shao-Lun
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机构:
Tunghai Univ, Dept Life Sci, Taichung 40704, TaiwanSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, Brazil
Liu, Shao-Lun
Verbruggen, Heroen
论文数: 0引用数: 0
h-index: 0
机构:
Univ Melbourne, Sch Biosci, Melbourne, Vic 3010, AustraliaSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, Brazil
Verbruggen, Heroen
De Clerck, Olivier
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h-index: 0
机构:
Univ Ghent, Phycol Res Grp, Krijgslaan 281-S8, B-9000 Ghent, BelgiumSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, Brazil
De Clerck, Olivier
Necchi, Orlando, Jr.
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机构:
Sao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, BrazilSao Paulo State Univ, Zool & Bot Dept, BR-15054000 Sao Jose Do Rio Preto, Brazil
机构:
Sao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, BrazilSao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, Brazil
Da Silva, Nadia M. Lemes
Crowell, Roseanna M.
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机构:
Ohio Univ, Environm & Plant Biol Dept, Porter Hall, Athens, OH 45701 USASao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, Brazil
Crowell, Roseanna M.
Vis, Morgan I.
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Ohio Univ, Environm & Plant Biol Dept, Porter Hall, Athens, OH 45701 USASao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, Brazil
Vis, Morgan I.
Chiasson, Wayne B.
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Ohio Univ, Environm & Plant Biol Dept, Porter Hall, Athens, OH 45701 USASao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, Brazil
Chiasson, Wayne B.
Paiano, Monica o.
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Sao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, BrazilSao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, Brazil
Paiano, Monica o.
Lopes, Yasmin M. Silva
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Sao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, BrazilSao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, Brazil
Lopes, Yasmin M. Silva
Necchi, Orlando JR.
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Sao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, BrazilSao Paulo State Univ, Biol Sci Dept, Rua Cristovao Colombo 2265, BR-15054000 Sao Jose Do Rio Preto, Brazil
机构:
School of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi UniversitySchool of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi University
Kunpeng FANG
Fangru NAN
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School of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi UniversitySchool of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi University
Fangru NAN
Jia FENG
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School of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi UniversitySchool of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi University
Jia FENG
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Junping Lü
Qi LIU
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School of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi UniversitySchool of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi University
Qi LIU
Xudong LIU
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School of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi UniversitySchool of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi University
Xudong LIU
Shulian XIE
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School of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi UniversitySchool of Life Science, Shanxi Key Laboratory for Research and Development of Regional Plants, Shanxi University
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Fang, Kun-Peng
Nan, Fang-Ru
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Nan, Fang-Ru
Feng, Jia
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Feng, Jia
Lv, Jun-Ping
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Lv, Jun-Ping
Liu, Qi
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Liu, Qi
Liu, Xu-Dong
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Liu, Xu-Dong
Xie, Shu-Lian
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
机构:
Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Fang, Kunpeng
Nan, Fangru
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Nan, Fangru
Feng, Jia
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Feng, Jia
Lu, Junping
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Lu, Junping
Liu, Qi
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Liu, Qi
Liu, Xudong
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
Liu, Xudong
Xie, Shulian
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Peoples R China
机构:
Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R China
Han, Jin-Fen
Nan, Fang-Ru
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R China
Nan, Fang-Ru
Feng, Jia
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R China
Feng, Jia
Lv, Jun-Ping
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R China
Lv, Jun-Ping
Liu, Qi
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R China
Liu, Qi
Liu, Xu-Dong
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h-index: 0
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Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R China
Liu, Xu-Dong
Xie, Shu-Lian
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机构:
Shanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R ChinaShanxi Univ, Sch Life Sci, Shanxi Key Lab Res & Dev Reg Plants, Taiyuan 030006, Shanxi, Peoples R China